Variant report

Variant	rs59659135
Chromosome Location	chr4:101943906-101943907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101942660..101944164-chr4:101947986..101950030,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10000451	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10000538	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015787	1.00[ASN][1000 genomes]
rs1358313	0.92[ASN][1000 genomes]
rs28488364	0.84[ASN][1000 genomes]
rs34422081	0.84[ASN][1000 genomes]
rs41498549	0.84[ASN][1000 genomes]
rs58656951	0.84[ASN][1000 genomes]
rs6850799	0.92[ASN][1000 genomes]
rs6851231	0.92[ASN][1000 genomes]
rs7840	0.84[ASN][1000 genomes]
rs9684543	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
3	chr4:101940200-101944000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:101940200-101944000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:101940200-101944200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:101940400-101944000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:101940600-101944000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:101940800-101944000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:101940800-101958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:101941000-101944000	Enhancers	NH-A	brain
11	chr4:101941000-101960200	Weak transcription	Colonic Mucosa	Colon
12	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
13	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
15	chr4:101941600-101959400	Weak transcription	HepG2	liver
16	chr4:101941800-101944000	Enhancers	A549	lung
17	chr4:101941800-101944400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:101941800-101951400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:101941800-101953000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:101941800-101959200	Weak transcription	Left Ventricle	heart
21	chr4:101942000-101944000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:101942000-101944000	Enhancers	Aorta	Aorta
23	chr4:101942000-101944000	Enhancers	NHLF	lung
24	chr4:101942000-101944200	Enhancers	Osteobl	bone
25	chr4:101942000-101944400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:101942000-101944400	Enhancers	NHDF-Ad	bronchial
27	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:101942200-101946800	Weak transcription	Thymus	Thymus
29	chr4:101942200-101953000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr4:101942400-101944000	Enhancers	NHEK	skin
31	chr4:101942400-101952000	Weak transcription	Hela-S3	cervix
32	chr4:101942400-101960200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:101942600-101944000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:101942600-101944200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr4:101942600-101944400	Enhancers	HUVEC	blood vessel
37	chr4:101942600-101951000	Weak transcription	Dnd41	blood
38	chr4:101942600-101953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:101942600-101966800	Weak transcription	Gastric	stomach
40	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:101942800-101946200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr4:101942800-101947200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr4:101942800-101949800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:101942800-101953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:101942800-101959600	Weak transcription	Lung	lung
47	chr4:101943000-101945400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:101943000-101947200	Weak transcription	Primary T cells from cord blood	blood
49	chr4:101943000-101951200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr4:101943000-101952800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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