Variant report

Variant	rs596621
Chromosome Location	chr6:102055493-102055494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10457930	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12193068	1.00[YRI][hapmap]
rs12204255	1.00[ASN][1000 genomes]
rs4285325	1.00[ASN][1000 genomes]
rs62419629	1.00[ASN][1000 genomes]
rs62421387	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102046200-102062400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:102053800-102055800	Enhancers	Fetal Kidney	kidney
3	chr6:102054200-102055600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:102054400-102055800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:102054600-102055800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:102054600-102060400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:102054800-102055800	Enhancers	HepG2	liver
8	chr6:102055000-102055600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:102055000-102055600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:102055400-102055800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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