Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1019083	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10951600	0.82[EUR][1000 genomes]
rs10951601	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760438	0.82[EUR][1000 genomes]
rs12530511	0.84[EUR][1000 genomes]
rs12533451	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12533481	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537044	0.82[EUR][1000 genomes]
rs17619162	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686887	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2074935	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2299139	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3823619	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4437552	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73118050	0.81[EUR][1000 genomes]
rs73121835	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123797	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73125530	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128428	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39369400-39376000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39371800-39374400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:39372000-39374600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:39372000-39374800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:39372000-39379200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:39372400-39374600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:39372400-39374800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:39373400-39374800	Enhancers	HUES64 Cell Line	embryonic stem cell

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