Variant report

Variant	rs59682791
Chromosome Location	chr6:55081255-55081256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10498801	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948893	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948894	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12526414	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12662510	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12663056	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13343017	0.92[ASN][1000 genomes]
rs3122149	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3122153	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3134699	0.81[ASN][1000 genomes]
rs3134700	0.81[ASN][1000 genomes]
rs3134701	0.81[ASN][1000 genomes]
rs3134703	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3134708	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4236127	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55873439	0.83[AMR][1000 genomes]
rs58828550	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59420753	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59867521	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60304167	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6922310	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937705	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6937878	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6939376	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73434718	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9367622	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55081200-55081600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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