Variant report

Variant	rs59692288
Chromosome Location	chr12:87641484-87641485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55838952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57047996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57950149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062174	0.89[AFR][1000 genomes]
rs58506010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58729951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59948778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60036842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60675356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60920912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61081451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61132966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7307994	0.89[AFR][1000 genomes]
rs7310855	0.89[AFR][1000 genomes]
rs7313566	0.89[AFR][1000 genomes]
rs7316603	0.89[AFR][1000 genomes]
rs7980130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87640200-87641600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:87640800-87642000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:87641000-87642600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:87641000-87642600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:87641200-87642000	Enhancers	Aorta	Aorta
6	chr12:87641400-87642000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:87641400-87642400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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