Variant report

Variant	rs59709436
Chromosome Location	chr7:102482255-102482256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102473443..102475589-chr7:102480022..102482918,2	K562	blood:

Variant related genes	Relation type
ENSG00000252643	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10228495	0.81[ASN][1000 genomes]
rs10241865	0.89[ASN][1000 genomes]
rs10242028	0.89[ASN][1000 genomes]
rs10250490	0.86[ASN][1000 genomes]
rs10257317	0.84[ASN][1000 genomes]
rs10257543	0.82[EUR][1000 genomes]
rs10271157	0.89[ASN][1000 genomes]
rs10271184	0.96[ASN][1000 genomes]
rs10273725	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10279449	0.91[ASN][1000 genomes]
rs10487283	0.96[EUR][1000 genomes]
rs10499952	0.81[EUR][1000 genomes]
rs10953374	0.84[ASN][1000 genomes]
rs1100044	0.81[EUR][1000 genomes]
rs1100046	0.84[ASN][1000 genomes]
rs11970869	0.82[EUR][1000 genomes]
rs11972019	0.82[EUR][1000 genomes]
rs11972644	0.82[EUR][1000 genomes]
rs11973870	0.85[EUR][1000 genomes]
rs11978670	0.82[EUR][1000 genomes]
rs11978768	0.82[EUR][1000 genomes]
rs11978799	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11980643	0.82[EUR][1000 genomes]
rs11981980	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11983456	0.85[EUR][1000 genomes]
rs11983521	0.85[EUR][1000 genomes]
rs12056296	0.81[EUR][1000 genomes]
rs12533386	0.81[EUR][1000 genomes]
rs12537977	0.86[ASN][1000 genomes]
rs12538955	0.96[EUR][1000 genomes]
rs12540384	0.82[EUR][1000 genomes]
rs12666764	0.85[EUR][1000 genomes]
rs12667218	0.85[EUR][1000 genomes]
rs12668434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12669668	0.96[EUR][1000 genomes]
rs13242493	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1541519	0.91[ASN][1000 genomes]
rs17136090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17136137	0.82[EUR][1000 genomes]
rs2009503	0.82[EUR][1000 genomes]
rs2159022	0.82[EUR][1000 genomes]
rs2190673	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2411056	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2411059	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28856331	0.86[ASN][1000 genomes]
rs3779029	0.85[EUR][1000 genomes]
rs41501847	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4296965	0.82[ASN][1000 genomes]
rs56269620	0.96[ASN][1000 genomes]
rs56894117	0.85[EUR][1000 genomes]
rs56921864	0.82[EUR][1000 genomes]
rs57253646	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57350619	0.85[EUR][1000 genomes]
rs57368671	0.81[EUR][1000 genomes]
rs57545514	0.82[EUR][1000 genomes]
rs57776797	0.85[EUR][1000 genomes]
rs58191643	0.82[EUR][1000 genomes]
rs58680618	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58814323	0.99[EUR][1000 genomes]
rs58919995	0.96[EUR][1000 genomes]
rs59278165	0.82[EUR][1000 genomes]
rs59544295	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60524601	0.85[EUR][1000 genomes]
rs60599650	0.85[EUR][1000 genomes]
rs61679881	0.82[EUR][1000 genomes]
rs6465876	0.96[ASN][1000 genomes]
rs6465877	0.82[EUR][1000 genomes]
rs6465878	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6465879	0.81[EUR][1000 genomes]
rs6465880	0.89[ASN][1000 genomes]
rs6942855	0.82[EUR][1000 genomes]
rs6945369	0.85[EUR][1000 genomes]
rs6946773	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6947403	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6949150	0.82[EUR][1000 genomes]
rs6949391	0.84[ASN][1000 genomes]
rs6951288	0.99[EUR][1000 genomes]
rs6953980	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6956781	0.82[EUR][1000 genomes]
rs6957434	0.82[EUR][1000 genomes]
rs6957771	0.81[EUR][1000 genomes]
rs6960428	0.80[ASN][1000 genomes]
rs6967389	0.85[EUR][1000 genomes]
rs6969054	0.84[ASN][1000 genomes]
rs6975388	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6975451	0.82[EUR][1000 genomes]
rs6976005	0.85[EUR][1000 genomes]
rs6977145	0.82[EUR][1000 genomes]
rs73406250	0.95[EUR][1000 genomes]
rs73406284	0.82[EUR][1000 genomes]
rs73406302	0.82[EUR][1000 genomes]
rs73408204	0.82[EUR][1000 genomes]
rs7779145	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779618	0.82[EUR][1000 genomes]
rs7780981	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794668	0.94[ASN][1000 genomes]
rs7796335	0.82[EUR][1000 genomes]
rs7800387	0.81[EUR][1000 genomes]
rs7800548	0.96[ASN][1000 genomes]
rs7804322	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847646	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs847648	0.83[ASN][1000 genomes]
rs847649	0.82[ASN][1000 genomes]
rs847652	0.81[EUR][1000 genomes]
rs847656	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs847658	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs865865	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9690210	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv608059	chr7:102470455-102504773	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102454200-102484600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:102468000-102484600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:102470000-102490200	Weak transcription	Gastric	stomach
4	chr7:102470000-102516400	Weak transcription	Pancreas	Pancrea
5	chr7:102470400-102482800	Weak transcription	Brain Anterior Caudate	brain
6	chr7:102470800-102484400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:102470800-102493200	Weak transcription	Primary T cells from cord blood	blood
8	chr7:102471800-102500000	Weak transcription	Left Ventricle	heart
9	chr7:102472000-102484800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:102477400-102482400	Weak transcription	Stomach Mucosa	stomach
11	chr7:102477800-102500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:102478000-102489200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:102478200-102500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:102478200-102500000	Weak transcription	Ovary	ovary
15	chr7:102478800-102482800	Weak transcription	Fetal Intestine Large	intestine
16	chr7:102478800-102489600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:102478800-102492600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr7:102480800-102482400	Enhancers	HSMMtube	muscle
19	chr7:102480800-102482600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr7:102480800-102482600	Enhancers	HSMM	muscle
21	chr7:102480800-102482800	Enhancers	Fetal Lung	lung
22	chr7:102481000-102483000	Enhancers	Brain Germinal Matrix	brain
23	chr7:102481000-102483000	Weak transcription	HepG2	liver
24	chr7:102481800-102482600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:102481800-102483000	Enhancers	Fetal Stomach	stomach
26	chr7:102481800-102483600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:102482000-102482400	Active TSS	Fetal Brain Male	brain
28	chr7:102482000-102483400	Enhancers	NHDF-Ad	bronchial
29	chr7:102482000-102484200	Weak transcription	GM12878-XiMat	blood
30	chr7:102482000-102484600	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:102482200-102483400	Strong transcription	K562	blood

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