Variant report

Variant	rs59721837
Chromosome Location	chr15:58518446-58518447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28666827	1.00[AMR][1000 genomes]
rs56897769	1.00[AMR][1000 genomes]
rs57558739	1.00[AMR][1000 genomes]
rs58403699	1.00[AMR][1000 genomes]
rs59302123	1.00[AMR][1000 genomes]
rs59710194	1.00[AMR][1000 genomes]
rs60724513	1.00[AMR][1000 genomes]
rs74016548	1.00[AMR][1000 genomes]
rs74016582	1.00[AMR][1000 genomes]
rs74016583	1.00[AMR][1000 genomes]
rs74016588	1.00[AMR][1000 genomes]
rs74016592	1.00[AMR][1000 genomes]
rs74016597	1.00[AMR][1000 genomes]
rs74016602	1.00[AMR][1000 genomes]
rs74018009	1.00[AMR][1000 genomes]
rs74018010	1.00[AMR][1000 genomes]
rs74018011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018023	1.00[AMR][1000 genomes]
rs74018024	1.00[AMR][1000 genomes]
rs74018025	1.00[AMR][1000 genomes]
rs9920853	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58506600-58520200	Weak transcription	Liver	Liver
2	chr15:58514000-58520400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:58514800-58519200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:58515400-58520800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:58516400-58520200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:58516600-58520200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:58516600-58520200	Weak transcription	NHDF-Ad	bronchial
8	chr15:58516600-58520200	Weak transcription	NHEK	skin
9	chr15:58516600-58520400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:58516600-58520400	Weak transcription	Right Ventricle	heart
11	chr15:58516600-58520400	Weak transcription	NHLF	lung
12	chr15:58516600-58520600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:58516600-58520600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:58516600-58520600	Weak transcription	Spleen	Spleen
15	chr15:58516600-58520600	Weak transcription	Osteobl	bone
16	chr15:58516600-58520800	Weak transcription	Fetal Lung	lung
17	chr15:58516600-58520800	Weak transcription	Fetal Stomach	stomach
18	chr15:58516600-58521000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:58516800-58520200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:58516800-58520400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:58516800-58520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:58516800-58520400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:58516800-58520400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:58516800-58520400	Weak transcription	Left Ventricle	heart
25	chr15:58516800-58520400	Weak transcription	Right Atrium	heart
26	chr15:58516800-58520400	Weak transcription	HMEC	breast
27	chr15:58516800-58520400	Weak transcription	HSMM	muscle
28	chr15:58516800-58520600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:58516800-58520600	Weak transcription	Brain Angular Gyrus	brain
30	chr15:58516800-58520600	Weak transcription	Brain Anterior Caudate	brain
31	chr15:58516800-58521000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:58517000-58519800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:58517000-58520000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:58517000-58520200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:58517000-58520400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:58517000-58520400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:58517000-58520400	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:58517000-58520600	Weak transcription	Brain Substantia Nigra	brain
39	chr15:58517000-58520800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:58517000-58520800	Weak transcription	Adipose Nuclei	Adipose
41	chr15:58517200-58519200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:58517400-58519200	Enhancers	Fetal Muscle Leg	muscle
43	chr15:58518000-58519200	Enhancers	Fetal Muscle Trunk	muscle
44	chr15:58518400-58518600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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