Variant report

Variant	rs59733635
Chromosome Location	chr15:56203813-56203814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56202601..56204627-chr15:56205006..56206876,2	MCF-7	breast:
2	chr15:56199692..56201562-chr15:56202025..56204154,2	MCF-7	breast:

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10459621	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10518824	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10518828	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10518830	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518831	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11071233	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12437795	0.86[AFR][1000 genomes]
rs12437882	0.86[AFR][1000 genomes]
rs12439762	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12440230	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440431	0.86[AFR][1000 genomes]
rs12440476	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12441416	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12441843	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12441869	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12442940	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442946	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12442990	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12442991	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591210	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591621	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12591733	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592018	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592220	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12593387	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12593593	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594420	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12594913	0.82[EUR][1000 genomes]
rs1553739	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16976618	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16976626	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976635	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976638	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976644	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976646	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16976648	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16976652	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16976654	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1973571	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2271288	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34136305	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35329525	0.89[AFR][1000 genomes]
rs35617453	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55747940	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55765028	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55924913	0.98[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs55926597	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55959977	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55990153	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56109567	0.86[AFR][1000 genomes]
rs56112958	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56220861	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56327716	0.86[AFR][1000 genomes]
rs56796048	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56890666	0.86[AFR][1000 genomes]
rs56914055	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57195161	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57208793	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57273249	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57365614	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57472279	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58300472	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58703788	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58855534	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58879329	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60201187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60755985	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60760787	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61261303	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61423234	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61444949	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61558945	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62043794	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62043803	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043804	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043805	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043806	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043807	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043808	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043814	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043851	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043853	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043855	0.90[ASN][1000 genomes]
rs66463411	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66493820	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66503769	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66540128	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66571152	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66700079	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66735896	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67144308	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67192017	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67229420	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67240909	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67242621	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67312536	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67313474	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67387007	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67480957	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67497103	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67519209	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs67585628	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67620259	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67777171	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67790265	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67850372	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67927048	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67944364	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67955420	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67958775	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67974830	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68033152	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs68052665	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs68170026	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7175317	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7181148	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7181534	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72732265	0.82[ASN][1000 genomes]
rs72732270	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72732290	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72732295	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72732302	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72734315	0.82[EUR][1000 genomes]
rs72734323	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72734327	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72734329	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72734338	0.83[AFR][1000 genomes]
rs72734341	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72734345	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72734352	0.81[EUR][1000 genomes]
rs72734353	0.86[AFR][1000 genomes]
rs72734354	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73418178	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs925257	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs952533	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9744758	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv528617	chr15:56202069-56207983	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:56192400-56207800	Weak transcription	Liver	Liver
8	chr15:56192600-56209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:56200200-56208600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:56200200-56213200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:56200400-56209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:56200800-56218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:56201000-56230000	Weak transcription	Fetal Intestine Large	intestine
14	chr15:56201200-56217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:56201800-56205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:56202000-56207000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:56202200-56204800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:56202200-56204800	Weak transcription	NH-A	brain
19	chr15:56202200-56205000	Weak transcription	NHLF	lung
20	chr15:56202200-56207800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:56202600-56204400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:56202600-56204800	Weak transcription	Hela-S3	cervix
23	chr15:56202800-56204800	Weak transcription	NHDF-Ad	bronchial
24	chr15:56202800-56204800	Weak transcription	Osteobl	bone
25	chr15:56203600-56204200	Active TSS	Psoas Muscle	Psoas
26	chr15:56203600-56204600	Weak transcription	HSMMtube	muscle
27	chr15:56203600-56204600	Weak transcription	NHEK	skin
28	chr15:56203600-56204800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:56203600-56204800	Weak transcription	HMEC	breast
30	chr15:56203600-56204800	Strong transcription	HSMM	muscle
31	chr15:56203600-56205000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:56203600-56205000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:56203600-56205200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:56203600-56205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:56203600-56207400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:56203600-56209600	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr15:56203800-56204600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:56203800-56204600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:56203800-56204800	Enhancers	A549	lung

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