Variant report

Variant	rs59757809
Chromosome Location	chr8:11001906-11001907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10989309..10991277-chr8:11000364..11001975,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10503413	0.84[EUR][1000 genomes]
rs10503414	0.84[EUR][1000 genomes]
rs17152884	0.92[EUR][1000 genomes]
rs17152953	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736014	0.91[ASN][1000 genomes]
rs3736015	0.92[EUR][1000 genomes]
rs57551254	0.84[EUR][1000 genomes]
rs57827662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152481	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60088021	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60863755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61063469	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000695	0.84[EUR][1000 genomes]
rs7008658	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530504	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73530510	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530548	0.90[ASN][1000 genomes]
rs73530550	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73530555	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73530560	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73545496	0.84[EUR][1000 genomes]
rs73547404	0.84[EUR][1000 genomes]
rs73547414	0.92[EUR][1000 genomes]
rs73547429	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819338	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840926	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842261	0.84[EUR][1000 genomes]
rs7845493	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv1019796	chr8:10979442-11010826	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:10982800-11003400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:10983000-11002000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:10983000-11003200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:10986400-11002000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:10989600-11014200	Weak transcription	Pancreas	Pancrea
7	chr8:10991800-11011800	Weak transcription	Left Ventricle	heart
8	chr8:10992800-11002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:10997000-11002000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:10997200-11021000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:10997400-11002000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:10997400-11003800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:10997400-11006000	Weak transcription	HSMMtube	muscle
14	chr8:10997400-11011200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:10997400-11017400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:10997600-11002000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:10998000-11002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:10998200-11002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:10998600-11002000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:10999200-11002000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:10999400-11002000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:10999400-11002000	Weak transcription	Lung	lung
23	chr8:10999400-11009200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:10999400-11021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:11001400-11002200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:11001600-11021000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:11001800-11002000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:11001800-11002200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr8:11001800-11002400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr8:11001800-11002400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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