Variant report

Variant	rs59759359
Chromosome Location	chr8:9930790-9930791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9930550..9933030-chr8:9938731..9941412,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087802	0.89[ASN][1000 genomes]
rs10088663	0.89[ASN][1000 genomes]
rs10088890	0.89[ASN][1000 genomes]
rs10090114	0.89[ASN][1000 genomes]
rs1023961	0.89[ASN][1000 genomes]
rs11786253	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11984513	0.89[ASN][1000 genomes]
rs13249486	0.84[ASN][1000 genomes]
rs1484642	0.84[ASN][1000 genomes]
rs1484644	0.84[ASN][1000 genomes]
rs1521190	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1531918	0.84[ASN][1000 genomes]
rs1531919	0.84[ASN][1000 genomes]
rs17151244	0.95[ASN][1000 genomes]
rs17689563	0.84[ASN][1000 genomes]
rs17738724	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17739113	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17739179	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2046399	0.84[ASN][1000 genomes]
rs2046400	0.84[ASN][1000 genomes]
rs2220149	0.89[ASN][1000 genomes]
rs2220150	0.89[ASN][1000 genomes]
rs2628140	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661755	0.95[ASN][1000 genomes]
rs472514	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4841284	0.89[ASN][1000 genomes]
rs4841285	0.89[ASN][1000 genomes]
rs534667	0.90[ASN][1000 genomes]
rs569446	0.95[ASN][1000 genomes]
rs57726127	0.84[ASN][1000 genomes]
rs57980126	0.85[ASN][1000 genomes]
rs58133870	0.85[ASN][1000 genomes]
rs58176018	0.85[ASN][1000 genomes]
rs58437548	0.85[ASN][1000 genomes]
rs60465334	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658385	0.90[ASN][1000 genomes]
rs685353	0.90[ASN][1000 genomes]
rs7005350	0.84[ASN][1000 genomes]
rs728878	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73664934	0.85[ASN][1000 genomes]
rs7812741	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823314	0.95[ASN][1000 genomes]
rs7833387	0.85[ASN][1000 genomes]
rs7833895	0.84[ASN][1000 genomes]
rs814405	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923046	0.89[ASN][1000 genomes]
rs9329216	0.89[ASN][1000 genomes]
rs963592	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv869934	chr8:9806639-9940586	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv890343	chr8:9888729-9932797	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018236	chr8:9915428-9940481	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913000-9933400	Weak transcription	Gastric	stomach
2	chr8:9913200-9933600	Weak transcription	Pancreas	Pancrea
3	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:9913400-9935800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:9913600-9938600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
7	chr8:9920200-9938400	Weak transcription	Spleen	Spleen
8	chr8:9926400-9940400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:9927800-9930800	Weak transcription	Liver	Liver
10	chr8:9928400-9933800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:9929400-9931400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
13	chr8:9929800-9931200	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr8:9930200-9934200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:9930200-9937200	Weak transcription	Primary B cells from cord blood	blood

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