Variant report

Variant	rs597750
Chromosome Location	chr6:101791131-101791132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1338156	0.86[EUR][1000 genomes]
rs1352039	0.80[EUR][1000 genomes]
rs1415946	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1475916	1.00[JPT][hapmap]
rs1832411	0.85[EUR][1000 genomes]
rs189739	0.80[EUR][1000 genomes]
rs1933356	0.80[EUR][1000 genomes]
rs2350100	0.86[CEU][hapmap]
rs2518177	0.85[EUR][1000 genomes]
rs2518226	1.00[JPT][hapmap]
rs2518228	1.00[JPT][hapmap]
rs2518231	1.00[JPT][hapmap]
rs2518234	1.00[JPT][hapmap]
rs2518235	1.00[JPT][hapmap]
rs2518238	1.00[JPT][hapmap]
rs2518249	1.00[JPT][hapmap]
rs2579928	0.83[EUR][1000 genomes]
rs2579930	0.85[EUR][1000 genomes]
rs2579933	1.00[JPT][hapmap]
rs2579934	1.00[JPT][hapmap]
rs2629983	0.85[EUR][1000 genomes]
rs2629989	0.87[EUR][1000 genomes]
rs2788276	1.00[JPT][hapmap]
rs283182	0.80[EUR][1000 genomes]
rs283188	0.80[EUR][1000 genomes]
rs283227	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs283229	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852501	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852508	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852532	1.00[JPT][hapmap]
rs3811080	1.00[JPT][hapmap]
rs386552	0.80[EUR][1000 genomes]
rs4103516	0.85[EUR][1000 genomes]
rs439291	0.80[EUR][1000 genomes]
rs471631	0.88[AFR][1000 genomes]
rs473846	0.88[AFR][1000 genomes]
rs484819	0.88[AFR][1000 genomes]
rs485947	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs489458	0.85[AFR][1000 genomes]
rs493123	0.85[AFR][1000 genomes]
rs500305	0.88[AFR][1000 genomes]
rs504406	0.88[AFR][1000 genomes]
rs504408	0.85[AFR][1000 genomes]
rs516735	0.87[EUR][1000 genomes]
rs517552	0.87[EUR][1000 genomes]
rs528879	0.85[AFR][1000 genomes]
rs542820	0.87[AFR][1000 genomes]
rs542923	0.85[AFR][1000 genomes]
rs546327	0.88[AFR][1000 genomes]
rs550690	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs566507	0.97[AFR][1000 genomes]
rs584655	0.85[AFR][1000 genomes]
rs5878658	0.88[ASN][1000 genomes]
rs594870	0.88[AFR][1000 genomes]
rs600842	0.88[AFR][1000 genomes]
rs606901	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs608847	0.88[AFR][1000 genomes]
rs636796	0.88[AFR][1000 genomes]
rs638255	0.85[AFR][1000 genomes]
rs649828	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs662916	0.85[AFR][1000 genomes]
rs668267	0.85[AFR][1000 genomes]
rs683149	0.85[AFR][1000 genomes]
rs683830	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs684160	0.88[AFR][1000 genomes]
rs685002	0.85[AFR][1000 genomes]
rs697440	0.86[AFR][1000 genomes]
rs697441	0.88[AFR][1000 genomes]
rs71566372	0.88[ASN][1000 genomes]
rs808952	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101790000-101792800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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