Variant report

Variant	rs59775198
Chromosome Location	chr8:62217310-62217311
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11987285	1.00[EUR][1000 genomes]
rs11992507	1.00[EUR][1000 genomes]
rs16926906	1.00[EUR][1000 genomes]
rs16926938	1.00[EUR][1000 genomes]
rs1835758	1.00[EUR][1000 genomes]
rs56031720	1.00[EUR][1000 genomes]
rs57869223	1.00[EUR][1000 genomes]
rs58092797	1.00[EUR][1000 genomes]
rs58250124	1.00[EUR][1000 genomes]
rs58325626	1.00[EUR][1000 genomes]
rs59038492	1.00[EUR][1000 genomes]
rs59721840	1.00[EUR][1000 genomes]
rs59924634	1.00[EUR][1000 genomes]
rs60272015	1.00[EUR][1000 genomes]
rs60420622	1.00[EUR][1000 genomes]
rs6987677	1.00[EUR][1000 genomes]
rs6993580	1.00[EUR][1000 genomes]
rs73259354	1.00[EUR][1000 genomes]
rs73259357	1.00[EUR][1000 genomes]
rs73259365	1.00[EUR][1000 genomes]
rs73682259	1.00[EUR][1000 genomes]
rs73682260	1.00[EUR][1000 genomes]
rs73682269	1.00[EUR][1000 genomes]
rs73685726	1.00[EUR][1000 genomes]
rs73685727	1.00[EUR][1000 genomes]
rs73685728	1.00[EUR][1000 genomes]
rs73685729	1.00[EUR][1000 genomes]
rs73685730	1.00[EUR][1000 genomes]
rs73685731	1.00[EUR][1000 genomes]
rs73685732	1.00[EUR][1000 genomes]
rs73685733	1.00[EUR][1000 genomes]
rs73685734	1.00[EUR][1000 genomes]
rs73685735	1.00[EUR][1000 genomes]
rs73685738	1.00[EUR][1000 genomes]
rs73685740	1.00[EUR][1000 genomes]
rs73685742	1.00[EUR][1000 genomes]
rs73685743	1.00[EUR][1000 genomes]
rs7830460	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv831336	chr8:62188396-62364873	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62211800-62220400	Weak transcription	GM12878-XiMat	blood
2	chr8:62213400-62217400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:62215200-62223800	Weak transcription	Fetal Brain Female	brain
4	chr8:62216200-62217600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:62216400-62217600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:62216800-62217600	Enhancers	Brain Angular Gyrus	brain
7	chr8:62216800-62217600	Enhancers	Brain Cingulate Gyrus	brain
8	chr8:62216800-62221400	Weak transcription	Brain Germinal Matrix	brain
9	chr8:62217000-62217400	Enhancers	Brain Anterior Caudate	brain
10	chr8:62217200-62217400	Weak transcription	Fetal Brain Male	brain

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