Variant report

Variant	rs597781
Chromosome Location	chr2:20989534-20989535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12468102	0.96[EUR][1000 genomes]
rs12469525	0.96[EUR][1000 genomes]
rs12476001	0.92[EUR][1000 genomes]
rs16982023	0.96[EUR][1000 genomes]
rs16982026	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16988072	0.92[EUR][1000 genomes]
rs16988079	0.92[EUR][1000 genomes]
rs17390286	0.96[EUR][1000 genomes]
rs340601	0.96[EUR][1000 genomes]
rs340602	0.96[EUR][1000 genomes]
rs340603	0.96[EUR][1000 genomes]
rs340604	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340606	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340607	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs472692	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs490710	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492399	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971527	0.92[EUR][1000 genomes]
rs4971529	0.92[EUR][1000 genomes]
rs518968	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs519025	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs535022	0.83[AFR][1000 genomes]
rs575246	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645100	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645150	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs649018	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs666471	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs685246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7600933	0.96[EUR][1000 genomes]
rs839915	1.00[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20926400-20995000	Weak transcription	Hela-S3	cervix
2	chr2:20951800-20993200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:20952800-20990400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:20954200-21001200	Weak transcription	NH-A	brain
5	chr2:20958600-20995800	Weak transcription	HMEC	breast
6	chr2:20959000-20995400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:20959200-20997000	Weak transcription	Brain Substantia Nigra	brain
8	chr2:20960800-20996200	Weak transcription	HSMMtube	muscle
9	chr2:20964000-20996000	Weak transcription	Osteobl	bone
10	chr2:20965800-20993200	Weak transcription	Fetal Brain Female	brain
11	chr2:20965800-21003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:20968400-20993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:20968400-21003000	Weak transcription	Pancreas	Pancrea
14	chr2:20968600-20993600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:20968600-20996200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:20968800-20992600	Weak transcription	Spleen	Spleen
17	chr2:20969000-20994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:20969000-21003000	Weak transcription	Gastric	stomach
19	chr2:20970800-20992800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:20970800-20996400	Weak transcription	Brain Anterior Caudate	brain
21	chr2:20972200-20990000	Weak transcription	NHDF-Ad	bronchial
22	chr2:20973200-21003000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr2:20974600-20991000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:20974600-20993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr2:20974600-20994000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
27	chr2:20974800-21000200	Weak transcription	HSMM	muscle
28	chr2:20975000-20993200	Weak transcription	Fetal Kidney	kidney
29	chr2:20975000-20996200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr2:20980800-20997800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr2:20983000-20992600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:20983400-20991600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:20983400-20993400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr2:20983400-20999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:20984200-20997000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:20984600-20990600	Strong transcription	Liver	Liver
37	chr2:20984800-20996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr2:20986200-20989800	Strong transcription	Fetal Intestine Large	intestine
39	chr2:20986400-20989800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr2:20986400-20991400	Strong transcription	Primary T cells from cord blood	blood
41	chr2:20986400-20991600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr2:20986800-20989800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:20986800-20992800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:20986800-20995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr2:20987000-20993800	Weak transcription	A549	lung
46	chr2:20987000-20995800	Weak transcription	Placenta	Placenta
47	chr2:20987200-20991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:20987200-20997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:20987400-20997000	Weak transcription	Brain Angular Gyrus	brain
50	chr2:20987600-20991400	Strong transcription	HepG2	liver

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