Variant report

Variant	rs59781371
Chromosome Location	chr12:116999542-116999543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:116998103..117000799-chr12:117011833..117013423,2	MCF-7	breast:
2	chr12:116976160..116978024-chr12:116997996..116999867,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12312811	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116995200-116999600	Enhancers	Fetal Muscle Leg	muscle
2	chr12:116997400-117001800	Weak transcription	Fetal Lung	lung
3	chr12:116997600-116999600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:116997600-116999800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:116997600-117000000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:116997600-117000000	Enhancers	Primary hematopoietic stem cells	blood
7	chr12:116997800-116999600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr12:116997800-116999800	Enhancers	Primary B cells from peripheral blood	blood
9	chr12:116997800-116999800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr12:116997800-117000000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:116997800-117000000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:116997800-117000200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr12:116997800-117000200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr12:116997800-117000600	Weak transcription	Stomach Mucosa	stomach
15	chr12:116998000-116999600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr12:116998000-116999600	Enhancers	Fetal Thymus	thymus
17	chr12:116998000-117000000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr12:116998000-117000000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr12:116998000-117001800	Weak transcription	NHEK	skin
20	chr12:116998200-116999600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr12:116998200-116999800	Enhancers	Primary T cells from cord blood	blood
22	chr12:116998200-117000200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr12:116998400-117000000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr12:116998600-116999600	Enhancers	Primary B cells from cord blood	blood
25	chr12:116998600-117000000	Enhancers	Right Atrium	heart
26	chr12:116998600-117000400	Enhancers	Dnd41	blood
27	chr12:116998800-117000600	Weak transcription	Thymus	Thymus
28	chr12:116999000-116999600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr12:116999000-116999600	Flanking Active TSS	K562	blood
30	chr12:116999200-116999600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:116999200-116999600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:116999200-116999600	Enhancers	Spleen	Spleen
33	chr12:116999200-116999800	Enhancers	Fetal Intestine Small	intestine
34	chr12:116999400-116999600	Enhancers	Fetal Intestine Large	intestine
35	chr12:116999400-116999800	Enhancers	Placenta	Placenta

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