Variant report

Variant	rs59812946
Chromosome Location	chr11:47068457-47068458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11039071	0.94[AFR][1000 genomes]
rs11039087	0.80[AFR][1000 genomes]
rs11500471	0.83[AFR][1000 genomes]
rs12293894	0.84[AFR][1000 genomes]
rs6485729	0.83[AFR][1000 genomes]
rs73462095	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv312	chr11:47047247-47072397	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv554206	chr11:47061100-47071897	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:47056400-47073600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:47056600-47073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:47057200-47074200	Weak transcription	Hela-S3	cervix
8	chr11:47058600-47074800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:47061400-47082800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:47064000-47077600	Weak transcription	Fetal Lung	lung
11	chr11:47065000-47079000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:47065200-47073000	Weak transcription	Fetal Stomach	stomach
13	chr11:47067000-47077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:47068200-47079000	Weak transcription	Fetal Brain Male	brain
15	chr11:47068400-47092400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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