Variant report

Variant	rs5981832
Chromosome Location	chrX:74499397-74499398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12832571	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12839727	1.00[YRI][hapmap]
rs2886845	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4892408	0.93[YRI][hapmap]
rs5937384	1.00[YRI][hapmap]
rs5938075	0.93[YRI][hapmap]
rs7052314	1.00[YRI][hapmap]
rs7892016	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534085	chrX:74360310-74516106	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1067730	chrX:74463757-74592761	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv532879	chrX:74463757-74592761	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74495200-74528800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chrX:74495800-74527800	Weak transcription	Thymus	Thymus
3	chrX:74496000-74504600	Weak transcription	Left Ventricle	heart
4	chrX:74496200-74514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:74497600-74501600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chrX:74497800-74499400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chrX:74498200-74499400	Enhancers	Primary T cells from cord blood	blood
8	chrX:74498400-74499400	Enhancers	H1 Cell Line	embryonic stem cell
9	chrX:74498400-74499400	Enhancers	Osteobl	bone
10	chrX:74498600-74499400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chrX:74498600-74499600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chrX:74498800-74499400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chrX:74498800-74499400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chrX:74498800-74499400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chrX:74498800-74516400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chrX:74499000-74499400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chrX:74499000-74499400	Enhancers	Primary hematopoietic stem cells	blood
18	chrX:74499000-74499400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chrX:74499000-74499400	Enhancers	Right Atrium	heart
20	chrX:74499000-74501200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chrX:74499000-74501600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chrX:74499000-74504600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chrX:74499200-74499400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chrX:74499200-74499400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chrX:74499200-74499400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chrX:74499200-74499400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chrX:74499200-74499400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chrX:74499200-74499400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chrX:74499200-74499400	Active TSS	Psoas Muscle	Psoas
30	chrX:74499200-74501000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chrX:74499200-74501400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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