Variant report

Variant	rs59820773
Chromosome Location	chr1:197195437-197195438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:197189012..197192331-chr1:197194111..197196867,3	K562	blood:
2	chr1:197194857..197196547-chr1:197201975..197204320,2	MCF-7	breast:
3	chr1:197168837..197170545-chr1:197194441..197196229,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237861	Chromatin interaction
ENSG00000177888	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10494748	0.91[ASN][1000 genomes]
rs10494749	1.00[ASN][1000 genomes]
rs10494750	1.00[ASN][1000 genomes]
rs10494751	1.00[ASN][1000 genomes]
rs11800461	1.00[ASN][1000 genomes]
rs11801772	1.00[ASN][1000 genomes]
rs11808524	1.00[ASN][1000 genomes]
rs11808883	1.00[ASN][1000 genomes]
rs11809963	1.00[ASN][1000 genomes]
rs11811295	1.00[ASN][1000 genomes]
rs16841212	1.00[ASN][1000 genomes]
rs16841214	1.00[ASN][1000 genomes]
rs16841219	1.00[ASN][1000 genomes]
rs16841220	1.00[ASN][1000 genomes]
rs16841237	1.00[ASN][1000 genomes]
rs17514584	1.00[AMR][1000 genomes]
rs17514591	1.00[AMR][1000 genomes]
rs17514606	1.00[AMR][1000 genomes]
rs17514732	1.00[AMR][1000 genomes]
rs17514781	1.00[AMR][1000 genomes]
rs17514795	1.00[AMR][1000 genomes]
rs17514802	1.00[AMR][1000 genomes]
rs17514816	1.00[AMR][1000 genomes]
rs17549514	1.00[AMR][1000 genomes]
rs17549540	1.00[AMR][1000 genomes]
rs17549547	1.00[AMR][1000 genomes]
rs17549582	1.00[AMR][1000 genomes]
rs17549596	1.00[AMR][1000 genomes]
rs17549657	1.00[AMR][1000 genomes]
rs17549671	1.00[AMR][1000 genomes]
rs17549818	1.00[AMR][1000 genomes]
rs17549859	1.00[AMR][1000 genomes]
rs17549873	1.00[AMR][1000 genomes]
rs35897746	1.00[AMR][1000 genomes]
rs56660423	1.00[AMR][1000 genomes]
rs56912014	1.00[AMR][1000 genomes]
rs59560396	1.00[AMR][1000 genomes]
rs5999	1.00[AMR][1000 genomes]
rs6000	1.00[AMR][1000 genomes]
rs60769813	1.00[AMR][1000 genomes]
rs61117530	1.00[AMR][1000 genomes]
rs61172533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61249253	1.00[AMR][1000 genomes]
rs61264948	1.00[AMR][1000 genomes]
rs61278057	1.00[AMR][1000 genomes]
rs62624968	1.00[AMR][1000 genomes]
rs6428388	1.00[AMR][1000 genomes]
rs6669374	1.00[AMR][1000 genomes]
rs6669388	1.00[AMR][1000 genomes]
rs6675840	1.00[AMR][1000 genomes]
rs6700604	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6702338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6702739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7513644	1.00[AMR][1000 genomes]
rs7520405	1.00[AMR][1000 genomes]
rs7528827	1.00[AMR][1000 genomes]
rs7534439	1.00[AMR][1000 genomes]
rs7535048	1.00[ASN][1000 genomes]
rs7535814	1.00[AMR][1000 genomes]
rs7543584	1.00[AMR][1000 genomes]
rs7545831	1.00[AMR][1000 genomes]
rs7554881	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv873072	chr1:197079671-197221248	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv873073	chr1:197107074-197221248	Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197190000-197204400	Weak transcription	Left Ventricle	heart
2	chr1:197190200-197203000	Weak transcription	Aorta	Aorta
3	chr1:197194400-197195800	Enhancers	Fetal Lung	lung
4	chr1:197195400-197197000	Weak transcription	Right Atrium	heart

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