Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10517367	0.91[ASN][1000 genomes]
rs11938852	0.85[ASN][1000 genomes]
rs13112752	0.89[ASN][1000 genomes]
rs17086249	0.86[ASN][1000 genomes]
rs2412720	0.89[ASN][1000 genomes]
rs2412721	0.86[ASN][1000 genomes]
rs2412722	0.89[ASN][1000 genomes]
rs2412725	0.81[ASN][1000 genomes]
rs2412726	0.85[ASN][1000 genomes]
rs2899054	0.86[ASN][1000 genomes]
rs34546346	1.00[ASN][1000 genomes]
rs34577487	0.86[ASN][1000 genomes]
rs35736349	0.87[ASN][1000 genomes]
rs35976456	0.85[ASN][1000 genomes]
rs36092812	0.98[ASN][1000 genomes]
rs4355456	0.88[ASN][1000 genomes]
rs4645275	0.88[ASN][1000 genomes]
rs59053231	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60296378	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819574	0.83[ASN][1000 genomes]
rs6826903	0.89[ASN][1000 genomes]
rs6836376	0.85[ASN][1000 genomes]
rs6839870	0.86[ASN][1000 genomes]
rs73155600	0.85[ASN][1000 genomes]
rs73155601	0.88[ASN][1000 genomes]
rs73162699	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73162701	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7672541	0.86[ASN][1000 genomes]
rs7676365	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56931200-56943600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:56935400-56942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:56935400-56945000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:56935800-56942800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:56936000-56943800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:56937400-56941800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:56939000-56941800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:56940600-56940800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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