Variant report
| Variant | rs59843863 |
|---|---|
| Chromosome Location | chr7:145482574-145482575 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:145473213..145476091-chr7:145481669..145483827,2 | K562 | blood: | |
| 2 | chr7:145480955..145483168-chr7:145505213..145507964,2 | K562 | blood: | |
| 3 | chr7:145480904..145484102-chr7:145498283..145500839,4 | K562 | blood: | |
| 4 | chr7:145480673..145485123-chr7:145486120..145492126,9 | K562 | blood: | |
| 5 | chr7:145481226..145483746-chr7:145496053..145497822,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10230378 | 0.83[AFR][1000 genomes] |
| rs10246643 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10250572 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10253219 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10264482 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10270239 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13438263 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28406497 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28601775 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6976897 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73453084 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73458820 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73462841 | 0.85[AFR][1000 genomes] |
| rs7782094 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7782667 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754040 | chr7:145303352-145698352 | Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2755386 | chr7:145303352-145698352 | Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv889383 | chr7:145396141-145549570 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv831182 | chr7:145399806-145556489 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:145481600-145484800 | Active TSS | K562 | blood |
