Variant report

Variant	rs59848501
Chromosome Location	chr17:15865548-15865549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15848433..15851819-chr17:15861241..15867680,6	MCF-7	breast:
2	chr17:15864704..15867341-chr17:15873793..15875461,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56785477	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58545409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59445662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60117866	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276033	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8069362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
6	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
10	nsv907707	chr17:15846535-15950751	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv907709	chr17:15851196-15937487	Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	nsv907708	chr17:15851196-15950751	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1057493	chr17:15852125-15930718	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv543215	chr17:15852125-15930718	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv907710	chr17:15854257-15950751	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv960192	chr17:15856207-15867176	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15851200-15869600	Weak transcription	Gastric	stomach
2	chr17:15855800-15869800	Weak transcription	Fetal Intestine Small	intestine
3	chr17:15857200-15866600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:15858000-15868200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr17:15860000-15868400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr17:15860800-15868400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr17:15861000-15868600	Weak transcription	Esophagus	oesophagus
8	chr17:15861200-15868400	Weak transcription	Thymus	Thymus
9	chr17:15862000-15868600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:15862400-15866600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:15862400-15866600	Weak transcription	Placenta	Placenta
12	chr17:15862400-15868600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr17:15862400-15869800	Weak transcription	Spleen	Spleen
14	chr17:15862600-15867000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:15862600-15868400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:15862600-15869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr17:15862800-15866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:15862800-15866800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:15862800-15868600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr17:15863000-15868600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr17:15863000-15869200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:15863200-15866600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr17:15863200-15867000	Weak transcription	HSMM	muscle
24	chr17:15863400-15866400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr17:15863400-15866400	Weak transcription	A549	lung
26	chr17:15863400-15866400	Weak transcription	NH-A	brain
27	chr17:15863400-15866600	Weak transcription	Hela-S3	cervix
28	chr17:15863400-15866600	Weak transcription	HepG2	liver
29	chr17:15863400-15866600	Weak transcription	HUVEC	blood vessel
30	chr17:15863400-15867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr17:15863400-15867000	Weak transcription	NHLF	lung
32	chr17:15863400-15867200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr17:15863400-15868600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr17:15863400-15869400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:15863400-15869800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr17:15863600-15866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr17:15863600-15866400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr17:15863600-15866400	Weak transcription	NHEK	skin
39	chr17:15863600-15867000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr17:15863600-15867000	Weak transcription	NHDF-Ad	bronchial
41	chr17:15863600-15868400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr17:15864000-15868800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr17:15865000-15866800	Weak transcription	K562	blood
44	chr17:15865000-15867000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr17:15865200-15866600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:15865200-15866600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr17:15865200-15866600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr17:15865200-15866600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr17:15865200-15866800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr17:15865200-15866800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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