Variant report

Variant	rs59863382
Chromosome Location	chr13:96485956-96485957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96484418..96486030-chr13:96489191..96491096,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16951257	1.00[AMR][1000 genomes]
rs17882446	1.00[AMR][1000 genomes]
rs17883802	0.87[AFR][1000 genomes]
rs17885605	1.00[AMR][1000 genomes]
rs55671956	1.00[AMR][1000 genomes]
rs59712927	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60107631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61350965	0.87[AFR][1000 genomes]
rs74106020	1.00[AMR][1000 genomes]
rs74106032	1.00[AMR][1000 genomes]
rs74109010	1.00[AMR][1000 genomes]
rs74109011	1.00[AMR][1000 genomes]
rs74109012	1.00[AMR][1000 genomes]
rs74109013	1.00[AMR][1000 genomes]
rs74109014	1.00[AMR][1000 genomes]
rs74109015	1.00[AMR][1000 genomes]
rs74109016	1.00[AMR][1000 genomes]
rs74109017	1.00[AMR][1000 genomes]
rs74109018	1.00[AMR][1000 genomes]
rs74109019	1.00[AMR][1000 genomes]
rs74109020	1.00[AMR][1000 genomes]
rs74109021	1.00[AMR][1000 genomes]
rs74109022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv527566	chr13:96485609-96497070	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96445800-96490000	Weak transcription	HepG2	liver
2	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
3	chr13:96466400-96486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:96467400-96490800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr13:96468200-96489800	Weak transcription	GM12878-XiMat	blood
6	chr13:96468800-96486000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
8	chr13:96476400-96489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:96477400-96486000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:96478000-96486000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:96478000-96486000	Weak transcription	Adipose Nuclei	Adipose
12	chr13:96478000-96498200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:96478000-96502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:96478000-96502600	Weak transcription	Left Ventricle	heart
15	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
16	chr13:96478200-96486000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:96478200-96486000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr13:96478200-96486000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:96478200-96486400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr13:96478200-96489200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:96478200-96489800	Weak transcription	Fetal Intestine Large	intestine
22	chr13:96478200-96489800	Weak transcription	Fetal Muscle Leg	muscle
23	chr13:96478200-96490000	Weak transcription	Brain Hippocampus Middle	brain
24	chr13:96478200-96490400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr13:96478200-96490400	Weak transcription	Liver	Liver
26	chr13:96478200-96490600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr13:96478200-96493600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr13:96478200-96495000	Weak transcription	Lung	lung
29	chr13:96478200-96502200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:96478200-96502600	Weak transcription	Aorta	Aorta
33	chr13:96478200-96502600	Weak transcription	Fetal Stomach	stomach
34	chr13:96478200-96502600	Weak transcription	Gastric	stomach
35	chr13:96478200-96502600	Weak transcription	Ovary	ovary
36	chr13:96478600-96491400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:96479800-96486000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr13:96479800-96489600	Weak transcription	Fetal Intestine Small	intestine
39	chr13:96480400-96486000	Weak transcription	HSMMtube	muscle
40	chr13:96480400-96488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr13:96485200-96486000	Enhancers	HUVEC	blood vessel
42	chr13:96485200-96486600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr13:96485400-96486400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr13:96485400-96486400	Enhancers	A549	lung
45	chr13:96485400-96486600	Enhancers	NHEK	skin
46	chr13:96485400-96488600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:96485600-96486200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:96485600-96486200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:96485600-96486400	Enhancers	Brain Cingulate Gyrus	brain
50	chr13:96485600-96486400	Enhancers	Hela-S3	cervix

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