Variant report

Variant	rs59872216
Chromosome Location	chr7:48571352-48571353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs12112361	0.87[ASN][1000 genomes]
rs12113920	0.87[ASN][1000 genomes]
rs12113960	0.87[ASN][1000 genomes]
rs12670340	0.87[ASN][1000 genomes]
rs12671073	0.87[ASN][1000 genomes]
rs12672551	0.87[ASN][1000 genomes]
rs12674401	0.86[ASN][1000 genomes]
rs12674424	0.84[ASN][1000 genomes]
rs1316349	0.87[ASN][1000 genomes]
rs1317162	0.86[ASN][1000 genomes]
rs1527835	0.85[ASN][1000 genomes]
rs1527839	0.85[ASN][1000 genomes]
rs1609212	0.87[ASN][1000 genomes]
rs1609213	0.87[ASN][1000 genomes]
rs1609214	0.87[ASN][1000 genomes]
rs17092931	0.87[ASN][1000 genomes]
rs17132439	0.87[ASN][1000 genomes]
rs17132443	0.87[ASN][1000 genomes]
rs17132460	0.87[ASN][1000 genomes]
rs17132479	0.87[ASN][1000 genomes]
rs17132491	0.87[ASN][1000 genomes]
rs1918580	0.87[ASN][1000 genomes]
rs1918581	0.87[ASN][1000 genomes]
rs1918586	0.87[ASN][1000 genomes]
rs1918587	0.87[ASN][1000 genomes]
rs1918588	0.87[ASN][1000 genomes]
rs1918589	0.87[ASN][1000 genomes]
rs1918595	0.88[ASN][1000 genomes]
rs1918596	0.87[ASN][1000 genomes]
rs1918597	0.87[ASN][1000 genomes]
rs1918598	0.87[ASN][1000 genomes]
rs1918600	0.83[ASN][1000 genomes]
rs1918601	0.87[ASN][1000 genomes]
rs1918602	0.87[ASN][1000 genomes]
rs1918606	0.86[ASN][1000 genomes]
rs1918608	0.87[ASN][1000 genomes]
rs2141251	0.87[ASN][1000 genomes]
rs2178086	0.87[ASN][1000 genomes]
rs2178087	0.87[ASN][1000 genomes]
rs2222731	0.87[ASN][1000 genomes]
rs34252471	0.87[ASN][1000 genomes]
rs4072501	0.87[ASN][1000 genomes]
rs4072502	0.87[ASN][1000 genomes]
rs4072503	0.87[ASN][1000 genomes]
rs41332948	0.87[ASN][1000 genomes]
rs4144061	0.83[ASN][1000 genomes]
rs4144063	0.87[ASN][1000 genomes]
rs4144064	0.87[ASN][1000 genomes]
rs4144067	0.87[ASN][1000 genomes]
rs4144068	0.83[ASN][1000 genomes]
rs4295610	0.87[ASN][1000 genomes]
rs4296993	0.87[ASN][1000 genomes]
rs4398852	0.82[ASN][1000 genomes]
rs4587280	0.87[ASN][1000 genomes]
rs55903755	0.86[ASN][1000 genomes]
rs56134922	0.83[ASN][1000 genomes]
rs56205257	0.87[ASN][1000 genomes]
rs56213942	0.86[ASN][1000 genomes]
rs56241442	0.87[ASN][1000 genomes]
rs56393952	0.87[ASN][1000 genomes]
rs56798342	0.87[ASN][1000 genomes]
rs56806901	0.87[ASN][1000 genomes]
rs57401097	0.87[ASN][1000 genomes]
rs57877708	0.87[ASN][1000 genomes]
rs58077564	0.87[ASN][1000 genomes]
rs58321909	0.85[ASN][1000 genomes]
rs58433353	0.87[ASN][1000 genomes]
rs58486673	0.87[ASN][1000 genomes]
rs58635193	0.87[ASN][1000 genomes]
rs59100514	0.87[ASN][1000 genomes]
rs59243715	0.87[ASN][1000 genomes]
rs59549039	0.87[ASN][1000 genomes]
rs59673264	0.87[ASN][1000 genomes]
rs60184691	0.87[ASN][1000 genomes]
rs60813775	0.88[ASN][1000 genomes]
rs60918397	0.87[ASN][1000 genomes]
rs61171557	0.87[ASN][1000 genomes]
rs61310674	0.87[ASN][1000 genomes]
rs61602397	0.87[ASN][1000 genomes]
rs61649354	0.87[ASN][1000 genomes]
rs6583452	0.87[ASN][1000 genomes]
rs6583456	0.85[ASN][1000 genomes]
rs66522605	0.87[ASN][1000 genomes]
rs66591834	0.87[ASN][1000 genomes]
rs66729625	0.87[ASN][1000 genomes]
rs66763020	0.87[ASN][1000 genomes]
rs66785002	0.87[ASN][1000 genomes]
rs66793444	0.87[ASN][1000 genomes]
rs66909576	0.87[ASN][1000 genomes]
rs67040412	0.85[ASN][1000 genomes]
rs67074321	0.87[ASN][1000 genomes]
rs67081192	0.87[ASN][1000 genomes]
rs67187623	0.87[ASN][1000 genomes]
rs67208890	0.88[ASN][1000 genomes]
rs67249167	0.87[ASN][1000 genomes]
rs67249859	0.87[ASN][1000 genomes]
rs67298249	0.87[ASN][1000 genomes]
rs67316911	0.86[ASN][1000 genomes]
rs67331245	0.87[ASN][1000 genomes]
rs67370671	0.87[ASN][1000 genomes]
rs67398358	0.87[ASN][1000 genomes]
rs67744396	0.87[ASN][1000 genomes]
rs67744565	0.87[ASN][1000 genomes]
rs67748204	0.87[ASN][1000 genomes]
rs67764854	0.87[ASN][1000 genomes]
rs67845756	0.87[ASN][1000 genomes]
rs67852079	0.87[ASN][1000 genomes]
rs68007434	0.87[ASN][1000 genomes]
rs68029531	0.87[ASN][1000 genomes]
rs68084496	0.87[ASN][1000 genomes]
rs68110103	0.87[ASN][1000 genomes]
rs68168969	0.87[ASN][1000 genomes]
rs68179951	0.87[ASN][1000 genomes]
rs6944801	0.87[ASN][1000 genomes]
rs6954223	0.85[ASN][1000 genomes]
rs6955102	0.87[ASN][1000 genomes]
rs6957309	0.87[ASN][1000 genomes]
rs6963717	0.87[ASN][1000 genomes]
rs6966994	0.87[ASN][1000 genomes]
rs6970434	0.87[ASN][1000 genomes]
rs6972202	0.87[ASN][1000 genomes]
rs6977997	0.87[ASN][1000 genomes]
rs6980042	0.87[ASN][1000 genomes]
rs6980069	0.87[ASN][1000 genomes]
rs73094625	0.87[ASN][1000 genomes]
rs73109344	0.87[ASN][1000 genomes]
rs73109355	0.87[ASN][1000 genomes]
rs73109362	0.86[ASN][1000 genomes]
rs73109364	0.87[ASN][1000 genomes]
rs73109382	0.86[ASN][1000 genomes]
rs73109385	0.86[ASN][1000 genomes]
rs73109399	0.86[ASN][1000 genomes]
rs73109401	0.87[ASN][1000 genomes]
rs73111405	0.87[ASN][1000 genomes]
rs7455877	0.87[ASN][1000 genomes]
rs7457791	0.87[ASN][1000 genomes]
rs7778895	0.86[ASN][1000 genomes]
rs7781149	0.87[ASN][1000 genomes]
rs7785069	0.87[ASN][1000 genomes]
rs7804139	0.87[ASN][1000 genomes]
rs7806480	0.87[ASN][1000 genomes]
rs7807529	0.87[ASN][1000 genomes]
rs7810275	0.86[ASN][1000 genomes]
rs9690617	0.87[ASN][1000 genomes]
rs9691143	0.87[ASN][1000 genomes]
rs9691391	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48523800-48574000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48566400-48575000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:48568800-48575200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:48570800-48574200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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