Variant report

Variant	rs598862
Chromosome Location	chr11:59946302-59946303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10750930	0.89[JPT][hapmap]
rs1286182	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1294440	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs1303617	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1303618	0.96[EUR][1000 genomes]
rs1303619	0.96[EUR][1000 genomes]
rs1303620	0.90[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1303622	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1315507	0.96[EUR][1000 genomes]
rs1426252	0.87[ASN][1000 genomes]
rs1441585	0.90[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs2081546	0.87[ASN][1000 genomes]
rs2243987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433240	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847662	0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs474888	0.96[EUR][1000 genomes]
rs475494	0.96[EUR][1000 genomes]
rs475812	0.89[JPT][hapmap];0.96[EUR][1000 genomes]
rs477352	0.96[EUR][1000 genomes]
rs485682	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs489297	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs500886	0.96[EUR][1000 genomes]
rs500888	0.96[EUR][1000 genomes]
rs512548	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs512555	0.90[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs519743	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs523806	0.96[EUR][1000 genomes]
rs524755	0.96[EUR][1000 genomes]
rs524995	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs528421	0.96[EUR][1000 genomes]
rs535413	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs541468	0.96[EUR][1000 genomes]
rs542665	0.96[EUR][1000 genomes]
rs546840	0.96[EUR][1000 genomes]
rs548515	0.96[EUR][1000 genomes]
rs549633	0.96[EUR][1000 genomes]
rs562442	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs562637	0.96[EUR][1000 genomes]
rs569108	0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs571582	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs572084	0.96[EUR][1000 genomes]
rs573305	0.96[EUR][1000 genomes]
rs574060	0.96[EUR][1000 genomes]
rs574700	0.82[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs575103	0.96[EUR][1000 genomes]
rs575930	0.96[EUR][1000 genomes]
rs576295	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs576483	0.90[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs576616	0.96[EUR][1000 genomes]
rs578269	0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs581818	1.00[ASN][1000 genomes]
rs582407	0.87[ASN][1000 genomes]
rs585540	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs587634	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588448	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs590351	0.97[ASN][1000 genomes]
rs590532	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs592496	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594414	0.87[ASN][1000 genomes]
rs595014	0.87[ASN][1000 genomes]
rs596788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597982	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs600194	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs605820	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607639	0.87[ASN][1000 genomes]
rs613548	0.84[ASN][1000 genomes]
rs613629	0.87[ASN][1000 genomes]
rs615405	0.87[ASN][1000 genomes]
rs620368	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636988	0.87[ASN][1000 genomes]
rs638872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641051	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs642426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649234	0.86[ASN][1000 genomes]
rs650777	0.87[ASN][1000 genomes]
rs650853	0.85[ASN][1000 genomes]
rs650926	0.87[ASN][1000 genomes]
rs653285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654443	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661376	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs662674	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs668095	0.92[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs668134	0.92[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs670925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672218	0.87[ASN][1000 genomes]
rs674971	0.87[ASN][1000 genomes]
rs675316	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs675452	0.84[ASN][1000 genomes]
rs680699	0.97[ASN][1000 genomes]
rs682025	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs682739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485360	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv524137	chr11:59936979-59947252	Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59935800-59947200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:59937200-59946600	Genic enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59937200-59949800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:59938400-59946600	Weak transcription	Primary B cells from cord blood	blood
5	chr11:59942200-59947000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:59942600-59949200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:59943600-59948600	Weak transcription	Liver	Liver
8	chr11:59943800-59946800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:59943800-59947600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:59944000-59950400	Weak transcription	GM12878-XiMat	blood
11	chr11:59944400-59949200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
12	chr11:59945400-59946600	Enhancers	Hela-S3	cervix

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