Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10448011	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504069	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12056729	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12674652	0.94[EUR][1000 genomes]
rs13248468	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250382	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13278300	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16939396	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16939398	0.93[EUR][1000 genomes]
rs16939408	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16939444	0.95[EUR][1000 genomes]
rs16939445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1876718	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2667282	0.87[EUR][1000 genomes]
rs2891720	0.98[EUR][1000 genomes]
rs34381258	0.98[EUR][1000 genomes]
rs3735973	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4510886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873311	0.93[EUR][1000 genomes]
rs4873316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50015600-50022400	Weak transcription	Gastric	stomach
2	chr8:50016200-50022400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:50016800-50022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:50018800-50022400	Enhancers	K562	blood
5	chr8:50019000-50023400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:50019200-50023600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:50019400-50021800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:50020600-50025800	Weak transcription	Fetal Lung	lung
9	chr8:50020800-50022400	Weak transcription	Stomach Mucosa	stomach

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