Variant report

Variant	rs59922989
Chromosome Location	chr14:68121602-68121603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68121295..68123488-chr14:68126048..68128348,3	K562	blood:

Variant related genes	Relation type
ENSG00000100568	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12879877	0.85[AFR][1000 genomes]
rs12884807	0.85[AFR][1000 genomes]
rs12890397	0.85[AFR][1000 genomes]
rs12896052	0.85[AFR][1000 genomes]
rs34970739	0.85[AFR][1000 genomes]
rs35080917	1.00[AMR][1000 genomes]
rs35106153	1.00[AMR][1000 genomes]
rs35577122	1.00[AMR][1000 genomes]
rs35917338	1.00[AMR][1000 genomes]
rs3759762	0.85[AFR][1000 genomes]
rs57024266	1.00[AMR][1000 genomes]
rs57048278	1.00[AMR][1000 genomes]
rs59589798	1.00[AMR][1000 genomes]
rs60013875	1.00[AMR][1000 genomes]
rs60273960	1.00[AMR][1000 genomes]
rs60782801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011477	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61214213	1.00[AMR][1000 genomes]
rs61341378	1.00[AMR][1000 genomes]
rs61584136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272331	1.00[AMR][1000 genomes]
rs73274539	1.00[AMR][1000 genomes]
rs73276671	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276676	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276687	1.00[AMR][1000 genomes]
rs73278432	1.00[AMR][1000 genomes]
rs73278469	1.00[AMR][1000 genomes]
rs73280405	1.00[AMR][1000 genomes]
rs73280424	1.00[AMR][1000 genomes]
rs73280429	1.00[AMR][1000 genomes]
rs73280438	1.00[AMR][1000 genomes]
rs73280465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68088800-68123000	Weak transcription	Fetal Brain Male	brain
2	chr14:68109000-68130000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:68109000-68133200	Weak transcription	Stomach Mucosa	stomach
4	chr14:68109800-68124400	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:68109800-68126000	Strong transcription	Fetal Brain Female	brain
6	chr14:68111000-68126800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:68111000-68135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:68111800-68126000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:68112000-68124200	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr14:68112000-68124400	Strong transcription	Brain Germinal Matrix	brain
11	chr14:68112000-68129400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:68112000-68129800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr14:68112200-68125000	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr14:68112200-68126800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:68112200-68126800	Strong transcription	Placenta	Placenta
16	chr14:68112200-68127000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:68112200-68127000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:68112200-68127200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr14:68112200-68127200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr14:68112200-68128000	Strong transcription	Dnd41	blood
21	chr14:68112200-68128200	Strong transcription	Primary T cells from cord blood	blood
22	chr14:68112200-68128200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:68112200-68129200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr14:68112400-68124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:68112400-68124400	Strong transcription	HSMM	muscle
26	chr14:68112400-68126600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:68112400-68126800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:68112400-68126800	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:68112400-68127000	Strong transcription	Brain Anterior Caudate	brain
30	chr14:68112400-68127000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr14:68112400-68127800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr14:68112400-68127800	Strong transcription	A549	lung
33	chr14:68112400-68128000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:68112400-68128400	Strong transcription	Liver	Liver
35	chr14:68112400-68129400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr14:68112400-68129800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr14:68112400-68130000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:68112400-68130000	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:68112600-68122000	Weak transcription	Right Atrium	heart
40	chr14:68112800-68124400	Strong transcription	Primary B cells from cord blood	blood
41	chr14:68112800-68126600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:68112800-68128200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:68112800-68128200	Strong transcription	Left Ventricle	heart
44	chr14:68113000-68126800	Strong transcription	Brain Substantia Nigra	brain
45	chr14:68113000-68127400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr14:68113200-68127000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:68113400-68127600	Strong transcription	Fetal Thymus	thymus
48	chr14:68113600-68128000	Strong transcription	Fetal Intestine Large	intestine
49	chr14:68114200-68125000	Strong transcription	HUVEC	blood vessel
50	chr14:68114200-68128000	Strong transcription	Primary B cells from peripheral blood	blood

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