Variant report
| Variant | rs59958060 |
|---|---|
| Chromosome Location | chr5:124808147-124808148 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:124804057..124805782-chr5:124806040..124809032,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10075091 | 1.00[EUR][1000 genomes] |
| rs1554281 | 1.00[EUR][1000 genomes] |
| rs56707415 | 1.00[EUR][1000 genomes] |
| rs56988571 | 1.00[EUR][1000 genomes] |
| rs57697012 | 1.00[EUR][1000 genomes] |
| rs59000628 | 1.00[EUR][1000 genomes] |
| rs60202964 | 1.00[EUR][1000 genomes] |
| rs61304237 | 1.00[EUR][1000 genomes] |
| rs61472360 | 1.00[EUR][1000 genomes] |
| rs6878929 | 1.00[EUR][1000 genomes] |
| rs6883449 | 1.00[EUR][1000 genomes] |
| rs6883628 | 1.00[EUR][1000 genomes] |
| rs6884059 | 1.00[EUR][1000 genomes] |
| rs73303332 | 1.00[EUR][1000 genomes] |
| rs73303384 | 1.00[EUR][1000 genomes] |
| rs73303399 | 1.00[EUR][1000 genomes] |
| rs73303400 | 1.00[EUR][1000 genomes] |
| rs73305305 | 1.00[EUR][1000 genomes] |
| rs73305308 | 1.00[EUR][1000 genomes] |
| rs73305320 | 1.00[EUR][1000 genomes] |
| rs73305337 | 1.00[EUR][1000 genomes] |
| rs73305339 | 1.00[EUR][1000 genomes] |
| rs73305342 | 1.00[EUR][1000 genomes] |
| rs73305345 | 1.00[EUR][1000 genomes] |
| rs73305365 | 1.00[EUR][1000 genomes] |
| rs73305368 | 1.00[EUR][1000 genomes] |
| rs73305401 | 1.00[EUR][1000 genomes] |
| rs73307316 | 1.00[EUR][1000 genomes] |
| rs73312635 | 1.00[EUR][1000 genomes] |
| rs7729817 | 1.00[EUR][1000 genomes] |
| rs7730445 | 1.00[EUR][1000 genomes] |
| rs7732317 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030992 | chr5:124708549-125391503 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv537892 | chr5:124708549-125391503 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv882824 | chr5:124789500-124875058 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:124806400-124811400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr5:124807200-124809600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
