Variant report

Variant	rs59960057
Chromosome Location	chr6:54589191-54589192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54562310..54563986-chr6:54587468..54589771,2	MCF-7	breast:
2	chr6:54587916..54591176-chr6:54736715..54740306,4	MCF-7	breast:
3	chr6:54573340..54575837-chr6:54587895..54589989,2	MCF-7	breast:
4	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
5	chr6:54581587..54585941-chr6:54586924..54591451,7	MCF-7	breast:
6	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
7	chr6:54586929..54589873-chr6:54742420..54744071,2	MCF-7	breast:
8	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
9	chr6:54588428..54589294-chr6:54730022..54730672,2	MCF-7	breast:
10	chr6:54564726..54568882-chr6:54587061..54590275,4	MCF-7	breast:
11	chr6:54586807..54589626-chr6:54590506..54593407,2	MCF-7	breast:
12	chr6:54588605..54590894-chr6:54594243..54596836,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60341279	1.00[AFR][1000 genomes]
rs60531428	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54583600-54594200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:54587200-54594200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:54587400-54594200	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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