Variant report

Variant	rs59962254
Chromosome Location	chr1:215703106-215703107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57602690	0.87[AFR][1000 genomes]
rs58582683	0.87[AFR][1000 genomes]
rs60427287	0.86[AFR][1000 genomes]
rs6672523	1.00[AFR][1000 genomes]
rs6695032	0.87[AFR][1000 genomes]
rs73083440	0.87[AFR][1000 genomes]
rs73083442	0.87[AFR][1000 genomes]
rs73083444	0.87[AFR][1000 genomes]
rs73083450	1.00[AFR][1000 genomes]
rs73083453	1.00[AFR][1000 genomes]
rs73083460	1.00[AFR][1000 genomes]
rs73083463	0.87[AFR][1000 genomes]
rs73083467	1.00[AFR][1000 genomes]
rs73083482	0.87[AFR][1000 genomes]
rs73083485	0.87[AFR][1000 genomes]
rs73083488	0.87[AFR][1000 genomes]
rs73085431	0.86[AFR][1000 genomes]
rs73085432	0.86[AFR][1000 genomes]
rs73085461	0.86[AFR][1000 genomes]
rs73087434	0.86[AFR][1000 genomes]
rs73087436	0.86[AFR][1000 genomes]
rs73087456	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215702200-215703200	Enhancers	NHDF-Ad	bronchial
2	chr1:215702200-215703600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215702400-215703200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:215702400-215703200	Enhancers	K562	blood
5	chr1:215703000-215705000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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