Variant report

Variant	rs59966379
Chromosome Location	chr7:126208517-126208518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126206442..126209218-chr7:126210188..126212895,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58768465	1.00[AMR][1000 genomes]
rs60356312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60739229	1.00[AMR][1000 genomes]
rs61141784	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944201	1.00[AMR][1000 genomes]
rs73447010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447022	1.00[AMR][1000 genomes]
rs73447033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447039	1.00[AFR][1000 genomes]
rs73449023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449077	1.00[AMR][1000 genomes]
rs73449083	1.00[AMR][1000 genomes]
rs73449091	1.00[AMR][1000 genomes]
rs73449094	1.00[AMR][1000 genomes]
rs73449097	1.00[AMR][1000 genomes]
rs73449223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1028204	chr7:125897362-126225444	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539118	chr7:125897362-126225444	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521803	chr7:126149319-126219766	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126203800-126209000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:126208400-126209200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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