The 2.0 version of rSNPBase

Variant report

Variant rs59972811
Chromosome Location chr1:94232838-94232839
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94220000-94254200 Weak transcription Aorta Aorta
2 chr1:94223000-94237000 Weak transcription NHEK skin
3 chr1:94225000-94233600 Weak transcription Right Atrium heart
4 chr1:94225600-94233600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr1:94225600-94233800 Weak transcription Fetal Lung lung
6 chr1:94227200-94233600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr1:94228200-94233800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:94229400-94234600 Enhancers Primary Natural Killer cells fromperipheralblood blood
9 chr1:94229800-94233600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:94229800-94234200 Weak transcription Pancreas Pancrea
11 chr1:94230400-94233200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:94230600-94233600 Weak transcription Lung lung
13 chr1:94230800-94233800 Weak transcription Fetal Stomach stomach
14 chr1:94230800-94234000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:94231600-94233000 Enhancers Breast Myoepithelial Primary Cells Breast
16 chr1:94231600-94233800 Enhancers Primary T cells from cord blood blood
17 chr1:94231600-94233800 Enhancers Primary T cells fromperipheralblood blood
18 chr1:94231600-94236000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr1:94231600-94236200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:94231600-94236200 Enhancers Fetal Thymus thymus
21 chr1:94231800-94233800 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:94231800-94234200 Enhancers HepG2 liver
23 chr1:94232000-94233600 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr1:94232000-94233600 Weak transcription Brain Substantia Nigra brain
25 chr1:94232000-94233800 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr1:94232200-94233400 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:94232200-94233400 Weak transcription Placenta Placenta
28 chr1:94232200-94233600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:94232200-94233600 Weak transcription Adipose Nuclei Adipose
30 chr1:94232200-94233600 Weak transcription Fetal Muscle Trunk muscle
31 chr1:94232200-94233600 Weak transcription Fetal Muscle Leg muscle
32 chr1:94232200-94233600 Strong transcription HMEC breast
33 chr1:94232400-94233000 Enhancers Fetal Intestine Large intestine
34 chr1:94232400-94233400 Enhancers Primary T helper cells PMA-I stimulated --
35 chr1:94232400-94233600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:94232400-94233600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr1:94232400-94233600 Weak transcription Fetal Intestine Small intestine
38 chr1:94232600-94233800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:94232600-94234200 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr1:94232800-94233000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:94232800-94233600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr1:94232800-94233600 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:94232800-94233800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:94232800-94233800 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr1:94232800-94233800 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr1:94232800-94233800 Weak transcription Fetal Kidney kidney
47 chr1:94232800-94233800 Weak transcription Thymus Thymus
48 chr1:94232800-94234000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015