Variant report

Variant	rs59985108
Chromosome Location	chr5:92366354-92366355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56041319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60523492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60800529	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92365600-92366600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:92365800-92366400	Enhancers	Adipose Nuclei	Adipose
3	chr5:92365800-92366600	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:92365800-92366600	Enhancers	HepG2	liver
5	chr5:92366200-92366600	Enhancers	Brain Hippocampus Middle	brain
6	chr5:92366200-92366600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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