Variant report

Variant	rs60003859
Chromosome Location	chr2:37640028-37640029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37635921..37638879-chr2:37639568..37642388,3	K562	blood:
2	chr2:37639517..37640406-chr2:38059118..38060104,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13425396	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17020676	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020693	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020696	1.00[EUR][1000 genomes]
rs4131231	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4425058	0.84[EUR][1000 genomes]
rs57223658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57954128	0.84[EUR][1000 genomes]
rs60205341	0.84[EUR][1000 genomes]
rs60374526	0.84[EUR][1000 genomes]
rs61022900	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61356018	0.97[EUR][1000 genomes]
rs61460713	0.84[EUR][1000 genomes]
rs6544075	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6544077	0.91[AFR][1000 genomes]
rs6708554	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708931	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6711805	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6727245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739990	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6741256	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751874	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752559	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755472	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6755835	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756253	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865105	0.89[EUR][1000 genomes]
rs72879949	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72879952	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879959	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879966	1.00[EUR][1000 genomes]
rs72879969	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879979	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879983	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72881514	0.97[EUR][1000 genomes]
rs72881515	0.97[EUR][1000 genomes]
rs72881519	0.97[EUR][1000 genomes]
rs72881552	0.89[EUR][1000 genomes]
rs72881557	0.89[EUR][1000 genomes]
rs72881560	0.89[EUR][1000 genomes]
rs73924621	0.84[EUR][1000 genomes]
rs73924622	0.84[EUR][1000 genomes]
rs73924623	0.84[EUR][1000 genomes]
rs7570240	0.82[EUR][1000 genomes]
rs7602773	0.92[AFR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37625600-37641800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:37639600-37640800	Weak transcription	Fetal Brain Male	brain
3	chr2:37639600-37641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:37639600-37641800	Weak transcription	Fetal Brain Female	brain
5	chr2:37639600-37641800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:37639600-37641800	Weak transcription	HSMMtube	muscle
7	chr2:37639800-37641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:37639800-37641800	Weak transcription	HSMM	muscle
9	chr2:37640000-37641600	Weak transcription	Fetal Thymus	thymus
10	chr2:37640000-37642600	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links