Variant report
| Variant | rs60016940 |
|---|---|
| Chromosome Location | chr6:150842849-150842850 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs4133114 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56115385 | 1.00[EUR][1000 genomes] |
| rs56240015 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57832891 | 1.00[EUR][1000 genomes] |
| rs57941088 | 1.00[EUR][1000 genomes] |
| rs58095059 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58578147 | 1.00[EUR][1000 genomes] |
| rs59258256 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59672491 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73605181 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73606254 | 1.00[EUR][1000 genomes] |
| rs73606255 | 1.00[EUR][1000 genomes] |
| rs73607031 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73607056 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73607069 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73607070 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73780022 | 1.00[EUR][1000 genomes] |
| rs73780023 | 1.00[EUR][1000 genomes] |
| rs73780024 | 1.00[EUR][1000 genomes] |
| rs73780025 | 1.00[EUR][1000 genomes] |
| rs73780026 | 1.00[EUR][1000 genomes] |
| rs73780027 | 1.00[EUR][1000 genomes] |
| rs73782675 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020067 | chr6:150730783-150870708 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv886772 | chr6:150743364-151024280 | Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv464079 | chr6:150836676-150873766 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv604850 | chr6:150836676-150873766 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150841600-150843000 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr6:150842400-150843200 | Weak transcription | Fetal Brain Male | brain |
