Variant report

Variant	rs60018171
Chromosome Location	chr6:64056748-64056749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12111052	0.85[AFR][1000 genomes]
rs12111159	0.85[AFR][1000 genomes]
rs12111218	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12111488	0.83[AFR][1000 genomes]
rs12111559	0.85[AFR][1000 genomes]
rs57018235	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57192996	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59514171	0.89[AFR][1000 genomes]
rs6454127	0.81[AFR][1000 genomes]
rs6926934	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936427	0.81[AFR][1000 genomes]
rs7764987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7776434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64040400-64071200	Weak transcription	Placenta	Placenta
2	chr6:64051400-64058000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:64056000-64058200	Enhancers	HepG2	liver
4	chr6:64056200-64057200	Genic enhancers	A549	lung
5	chr6:64056600-64057000	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr6:64056600-64057000	Flanking Active TSS	Fetal Intestine Small	intestine
7	chr6:64056600-64059800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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