Variant report

Variant	rs60028995
Chromosome Location	chr11:70990855-70990856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11603698	0.81[EUR][1000 genomes]
rs11604196	0.81[EUR][1000 genomes]
rs35853657	0.81[EUR][1000 genomes]
rs57565284	1.00[EUR][1000 genomes]
rs59352428	1.00[EUR][1000 genomes]
rs60717420	0.93[EUR][1000 genomes]
rs751211	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70981200-70991000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:70990400-70993000	Enhancers	HepG2	liver
3	chr11:70990800-70991600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:70990800-70991600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:70990800-70991800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links