Variant report

Variant	rs6003412
Chromosome Location	chr22:23297780-23297781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:23196682..23198723-chr22:23296956..23298763,18	K562	blood:
2	chr22:23225847..23226777-chr22:23297600..23298339,3	K562	blood:
3	chr22:23189507..23193019-chr22:23295043..23299398,3	K562	blood:
4	chr22:23297770..23298924-chr22:23470211..23471441,11	K562	blood:
5	chr22:23130321..23131772-chr22:23297521..23298867,16	K562	blood:
6	chr22:23221282..23222436-chr22:23297430..23298768,6	K562	blood:
7	chr22:23151972..23153147-chr22:23296580..23298928,25	K562	blood:
8	chr22:23197959..23198625-chr22:23297727..23298760,3	MCF-7	breast:
9	chr22:23197380..23198928-chr22:23297750..23299623,6	MCF-7	breast:
10	chr22:23292544..23295417-chr22:23296767..23298296,2	K562	blood:
11	chr22:23213175..23213782-chr22:23297384..23298551,3	K562	blood:
12	chr22:23112664..23113297-chr22:23297048..23297785,2	K562	blood:
13	chr22:23095780..23096787-chr22:23297638..23298767,10	K562	blood:
14	chr22:23098299..23098965-chr22:23297613..23298499,2	K562	blood:
15	chr22:23189507..23193106-chr22:23295043..23298006,3	K562	blood:
16	chr22:22818017..22819078-chr22:23297702..23298769,7	K562	blood:
17	chr22:23190259..23191261-chr22:23297702..23298682,5	MCF-7	breast:
18	chr22:22785563..22786579-chr22:23296602..23298027,5	K562	blood:
19	chr22:23144565..23145628-chr22:23297770..23298814,8	K562	blood:
20	chr22:23190217..23192140-chr22:23297702..23298803,18	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253448	Chromatin interaction
ENSG00000211672	Chromatin interaction
ENSG00000207832	Chromatin interaction
ENSG00000211655	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1079766	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1988315	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2013551	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2013554	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2096534	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2188130	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2330333	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35607949	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3930973	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5996427	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5996428	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5996433	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5996434	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5996445	0.81[AMR][1000 genomes]
rs5996446	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6003413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6003427	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6003430	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6003439	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6003445	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6003452	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs765744	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8137339	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8137923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877728	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs882097	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs915613	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9608056	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9608057	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9612176	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9612177	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9612207	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432185	chr22:22427560-23324839	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv1803110	chr22:22731758-23497674	Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1065639	chr22:22850879-23354297	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	113 gene(s)	inside rSNPs	diseases
4	nsv915235	chr22:22971768-23650987	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
5	esv3388845	chr22:22973346-23652447	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	100 gene(s)	inside rSNPs	diseases
6	nsv531799	chr22:22993679-23642142	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv1061433	chr22:22997799-23649107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
8	nsv521695	chr22:22998337-23648009	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
9	nsv915236	chr22:22998337-23650987	Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
11	nsv531800	chr22:23002708-23648163	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
12	nsv916593	chr22:23002709-23648790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
13	nsv993496	chr22:23002709-23654222	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
14	nsv1067002	chr22:23007167-23643363	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
15	nsv1067324	chr22:23007367-23654223	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
16	nsv533839	chr22:23012013-23643223	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
17	nsv916933	chr22:23012069-23654237	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
18	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
19	nsv531802	chr22:23046186-23627391	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	diseases
20	nsv1060509	chr22:23055148-23648719	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
21	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
22	nsv1062780	chr22:23060449-23648719	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
23	nsv948942	chr22:23063178-23645718	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
24	nsv1063200	chr22:23097177-23643224	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
25	nsv949250	chr22:23157485-23645718	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
26	nsv834153	chr22:23172520-23349640	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
27	esv34158	chr22:23216762-23499513	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
28	nsv1055951	chr22:23273137-23337914	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23291400-23298600	Enhancers	Primary B cells from peripheral blood	blood
2	chr22:23291800-23298400	Enhancers	Dnd41	blood
3	chr22:23293400-23298200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr22:23294000-23298200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr22:23294800-23298200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr22:23295000-23298600	Enhancers	GM12878-XiMat	blood
7	chr22:23295400-23298000	Weak transcription	Right Atrium	heart
8	chr22:23296000-23298200	Enhancers	Brain Cingulate Gyrus	brain
9	chr22:23296400-23298200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr22:23296800-23298200	Enhancers	Primary B cells from cord blood	blood
11	chr22:23296800-23298200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr22:23296800-23298200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr22:23297000-23297800	Weak transcription	Brain Anterior Caudate	brain
14	chr22:23297000-23301000	Weak transcription	Brain Hippocampus Middle	brain
15	chr22:23297200-23298200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr22:23297400-23298200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr22:23297600-23297800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr22:23297600-23297800	Bivalent Enhancer	A549	lung
19	chr22:23297600-23298200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr22:23297600-23298200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr22:23297600-23298200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
22	chr22:23297600-23298200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr22:23297600-23298200	Enhancers	HMEC	breast

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