Variant report

Variant	rs60035542
Chromosome Location	chr9:18315521-18315522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1411154	1.00[AMR][1000 genomes]
rs16936485	1.00[AMR][1000 genomes]
rs56147320	1.00[AFR][1000 genomes]
rs56341301	1.00[AMR][1000 genomes]
rs56379357	1.00[AMR][1000 genomes]
rs56815370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56849057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56974885	1.00[AMR][1000 genomes]
rs57273644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58650494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58901600	1.00[AMR][1000 genomes]
rs58983810	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109291	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59796968	1.00[AMR][1000 genomes]
rs60215638	1.00[AMR][1000 genomes]
rs60545315	1.00[AMR][1000 genomes]
rs60701392	1.00[AMR][1000 genomes]
rs73643211	1.00[AMR][1000 genomes]
rs73643214	1.00[AMR][1000 genomes]
rs73643215	1.00[AMR][1000 genomes]
rs73643217	1.00[AMR][1000 genomes]
rs73643227	1.00[AMR][1000 genomes]
rs73643240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643251	1.00[AMR][1000 genomes]
rs7868061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892686	chr9:18273100-18328341	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv430001	chr9:18301116-18346392	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv982617	chr9:18303073-18318205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv525743	chr9:18312578-18359014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18305400-18315600	Weak transcription	Gastric	stomach
2	chr9:18314800-18317600	Weak transcription	HUVEC	blood vessel
3	chr9:18315200-18315800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:18315200-18315800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:18315200-18315800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:18315400-18315800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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