Variant report

Variant	rs60038749
Chromosome Location	chr3:144900158-144900159
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6777952	0.82[AFR][1000 genomes]
rs73011999	0.93[AFR][1000 genomes]
rs7615187	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877579	chr3:144815506-144933621	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv877580	chr3:144815506-144979382	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877581	chr3:144815506-145181910	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv998288	chr3:144815560-145147528	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv591931	chr3:144850047-144928287	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877582	chr3:144871811-144916414	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1848157	chr3:144880588-144903957	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1848561	chr3:144880588-144903957	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv877583	chr3:144880588-145066106	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1014348	chr3:144880711-144954785	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv536756	chr3:144880711-144954785	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144898400-144900400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:144898600-144900200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:144898600-144900400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:144898600-144900400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:144898600-144900600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:144898800-144900400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:144899000-144900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:144899000-144900200	Active TSS	Stomach Smooth Muscle	stomach
9	chr3:144899000-144900600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:144899200-144900600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:144899400-144900200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:144899400-144900200	Enhancers	Aorta	Aorta
13	chr3:144899400-144900200	Enhancers	Dnd41	blood
14	chr3:144899400-144900400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:144899400-144900600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:144899400-144900600	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr3:144899400-144900800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:144899400-144900800	Active TSS	Adipose Nuclei	Adipose
19	chr3:144899400-144905600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:144899600-144900200	Flanking Active TSS	Liver	Liver
21	chr3:144899600-144900400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:144899600-144900400	Active TSS	Colon Smooth Muscle	Colon
23	chr3:144899600-144900400	Active TSS	Duodenum Mucosa	Duodenum
24	chr3:144899600-144900400	Active TSS	Right Atrium	heart
25	chr3:144899600-144900600	Active TSS	A549	lung
26	chr3:144899600-144900800	Active TSS	NHDF-Ad	bronchial
27	chr3:144899800-144900400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:144899800-144900400	Enhancers	Fetal Brain Female	brain
29	chr3:144899800-144900600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:144899800-144900600	Active TSS	NHLF	lung
31	chr3:144900000-144900200	Flanking Active TSS	NHEK	skin
32	chr3:144900000-144900400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:144900000-144900400	Enhancers	Fetal Lung	lung
34	chr3:144900000-144900400	Active TSS	Ovary	ovary
35	chr3:144900000-144900400	Active TSS	Rectal Smooth Muscle	rectum
36	chr3:144900000-144900400	Active TSS	GM12878-XiMat	blood
37	chr3:144900000-144900600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr3:144900000-144900600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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