Variant report

Variant	rs60047223
Chromosome Location	chr9:14958048-14958049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55690915	1.00[AMR][1000 genomes]
rs57954003	1.00[AMR][1000 genomes]
rs59461104	1.00[AMR][1000 genomes]
rs59985893	0.95[AFR][1000 genomes]
rs73419726	1.00[AMR][1000 genomes]
rs73419728	1.00[AMR][1000 genomes]
rs73419735	1.00[AMR][1000 genomes]
rs73419742	0.95[AFR][1000 genomes]
rs73419749	0.95[AFR][1000 genomes]
rs73419755	0.95[AFR][1000 genomes]
rs73419771	0.82[AFR][1000 genomes]
rs73642484	1.00[AMR][1000 genomes]
rs73642486	1.00[AMR][1000 genomes]
rs73642488	1.00[AMR][1000 genomes]
rs73642489	1.00[AMR][1000 genomes]
rs73642494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14956200-14960800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:14957400-14961400	Weak transcription	Placenta	Placenta
3	chr9:14957400-14961600	Weak transcription	Adipose Nuclei	Adipose
4	chr9:14957600-14982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:14957800-14958200	Enhancers	HepG2	liver
6	chr9:14958000-14960800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:14958000-14962200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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