Variant report

Variant	rs60057678
Chromosome Location	chr1:94319732-94319733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94311361..94314854-chr1:94317865..94321072,4	K562	blood:
2	chr1:94310889..94314465-chr1:94319424..94321197,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FNBP1L-4	chr1:94317793-94319887	NONHSAT004554

Variant related genes	Relation type
ENSG00000260464	Chromatin interaction
ENSG00000137936	Chromatin interaction
ENSG00000211575	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10874804	0.91[AFR][1000 genomes]
rs10874805	0.91[AFR][1000 genomes]
rs11165011	0.89[EUR][1000 genomes]
rs11165027	0.94[AFR][1000 genomes]
rs11165028	0.90[AFR][1000 genomes]
rs11165029	0.91[AFR][1000 genomes]
rs11165032	0.89[AFR][1000 genomes]
rs11805379	0.91[EUR][1000 genomes]
rs12059028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12062272	0.91[EUR][1000 genomes]
rs12062925	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12069476	0.91[EUR][1000 genomes]
rs12076074	0.91[EUR][1000 genomes]
rs12078134	0.91[EUR][1000 genomes]
rs12080386	0.90[AFR][1000 genomes]
rs12081399	0.91[AFR][1000 genomes]
rs12090038	0.85[AFR][1000 genomes]
rs12090230	0.85[AFR][1000 genomes]
rs12094966	0.88[AFR][1000 genomes]
rs17110374	0.85[EUR][1000 genomes]
rs2234729	0.84[AFR][1000 genomes]
rs4075342	0.91[EUR][1000 genomes]
rs41292667	0.91[AFR][1000 genomes]
rs4542218	0.91[EUR][1000 genomes]
rs58790885	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs59444123	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs59545065	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61750895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6541397	0.91[EUR][1000 genomes]
rs6680755	0.91[EUR][1000 genomes]
rs6701957	0.91[EUR][1000 genomes]
rs6702045	0.85[AFR][1000 genomes]
rs6702064	0.85[AFR][1000 genomes]
rs6704348	0.91[EUR][1000 genomes]
rs72965451	0.83[EUR][1000 genomes]
rs72967332	0.86[EUR][1000 genomes]
rs72967387	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72969374	0.85[AFR][1000 genomes]
rs7515991	0.82[AFR][1000 genomes]
rs7525516	0.91[EUR][1000 genomes]
rs7552401	0.85[AFR][1000 genomes]
rs7555872	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822452	chr1:94278128-94320233	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	121 gene(s)	inside rSNPs	diseases
2	nsv998755	chr1:94294015-94341712	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	121 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94314200-94332800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:94314200-94334200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:94314200-94334400	Weak transcription	Brain Substantia Nigra	brain

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