Variant report

Variant	rs60081016
Chromosome Location	chr4:143850744-143850745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6834650	0.94[AFR][1000 genomes]
rs7660407	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv10580	chr4:143794158-143856359	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143849800-143850800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:143849800-143850800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:143849800-143851200	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:143850400-143851400	Enhancers	Fetal Intestine Small	intestine
5	chr4:143850400-143851600	Enhancers	Fetal Intestine Large	intestine
6	chr4:143850600-143850800	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr4:143850600-143851000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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