Variant report

Variant	rs60104343
Chromosome Location	chr12:67654181-67654182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:67461930..67464015-chr12:67653908..67656790,2	MCF-7	breast:
2	chr12:67652317..67654299-chr12:67658127..67660959,2	K562	blood:
3	chr12:67647986..67651907-chr12:67654023..67659120,6	K562	blood:

Variant related genes	Relation type
ENSG00000256248	Chromatin interaction
ENSG00000237766	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10878598	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11176668	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11176669	0.95[ASN][1000 genomes]
rs11176670	0.95[ASN][1000 genomes]
rs11176673	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11176686	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11176689	0.91[ASN][1000 genomes]
rs11176703	0.91[ASN][1000 genomes]
rs11176704	0.91[ASN][1000 genomes]
rs11176705	0.91[ASN][1000 genomes]
rs11176707	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11176711	0.86[ASN][1000 genomes]
rs12302564	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12305377	0.91[ASN][1000 genomes]
rs12306657	0.91[ASN][1000 genomes]
rs12311150	0.86[ASN][1000 genomes]
rs12314146	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28785562	0.83[AFR][1000 genomes]
rs3087577	0.91[ASN][1000 genomes]
rs3736630	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55646172	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55809526	0.95[ASN][1000 genomes]
rs55809587	0.95[ASN][1000 genomes]
rs55906716	0.95[ASN][1000 genomes]
rs55978724	0.95[ASN][1000 genomes]
rs56009409	0.89[AFR][1000 genomes]
rs56044711	0.89[AFR][1000 genomes]
rs56224819	0.95[ASN][1000 genomes]
rs56256810	0.91[AFR][1000 genomes]
rs56728872	0.95[ASN][1000 genomes]
rs56956717	0.84[AFR][1000 genomes]
rs58114937	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58559744	0.89[AFR][1000 genomes]
rs60009568	0.91[ASN][1000 genomes]
rs60072946	0.95[ASN][1000 genomes]
rs60077199	0.91[ASN][1000 genomes]
rs60971316	0.91[ASN][1000 genomes]
rs61195985	0.95[ASN][1000 genomes]
rs61219299	0.91[ASN][1000 genomes]
rs61237339	0.88[AFR][1000 genomes]
rs61281993	0.91[ASN][1000 genomes]
rs61539332	0.89[AFR][1000 genomes]
rs6581748	0.91[AFR][1000 genomes]
rs7137520	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7296364	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7298244	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7307353	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7312708	0.86[ASN][1000 genomes]
rs73318892	0.91[AFR][1000 genomes]
rs73320730	0.89[AFR][1000 genomes]
rs73320788	0.87[AFR][1000 genomes]
rs7954050	0.95[ASN][1000 genomes]
rs7968351	0.89[AFR][1000 genomes]
rs7974384	0.87[AFR][1000 genomes]
rs7976686	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7978989	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv3450703	chr12:67651785-67656783	Inactive region	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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