Variant report

Variant	rs60109929
Chromosome Location	chr12:116837347-116837348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55668932	0.91[ASN][1000 genomes]
rs56208649	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs60047044	0.91[ASN][1000 genomes]
rs73201961	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73204026	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73204034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204040	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73204041	0.91[ASN][1000 genomes]
rs73204046	0.91[ASN][1000 genomes]
rs73204048	0.91[ASN][1000 genomes]
rs73204049	0.91[ASN][1000 genomes]
rs73204053	0.84[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116830200-116843800	Weak transcription	NHLF	lung
2	chr12:116833800-116844200	Weak transcription	Osteobl	bone
3	chr12:116835000-116843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:116835200-116839400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:116835200-116840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:116835400-116839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:116835400-116843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:116836400-116840000	Weak transcription	Esophagus	oesophagus
9	chr12:116836400-116843000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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