Variant report

Variant	rs60114700
Chromosome Location	chr20:25686737-25686738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16987989	1.00[AMR][1000 genomes]
rs56791487	0.83[AMR][1000 genomes]
rs57648416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57796425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57830607	0.83[AMR][1000 genomes]
rs57923046	0.83[AMR][1000 genomes]
rs58190741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58516525	0.83[AMR][1000 genomes]
rs58698458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59370837	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59934724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60003095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60010356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60146944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60318677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60678917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60719275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60744587	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60838372	0.83[AMR][1000 genomes]
rs60871577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25678000-25687600	Weak transcription	Esophagus	oesophagus
3	chr20:25681000-25687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:25681400-25687400	Weak transcription	Dnd41	blood
5	chr20:25684800-25687600	Enhancers	HepG2	liver
6	chr20:25686400-25686800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr20:25686400-25686800	Enhancers	Liver	Liver
8	chr20:25686600-25687000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr20:25686600-25687400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr20:25686600-25687800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr20:25686600-25688000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr20:25686600-25688800	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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