Variant report

Variant	rs60138646
Chromosome Location	chr11:16976883-16976884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16974930..16976923-chr11:16989609..16992585,2	K562	blood:
2	chr11:16975638..16979707-chr11:16982694..16985336,3	MCF-7	breast:
3	chr11:16975602..16978503-chr11:16980370..16983065,3	MCF-7	breast:
4	chr11:16976807..16979737-chr11:16986276..16990868,5	MCF-7	breast:
5	chr11:16975727..16978192-chr11:16983279..16985913,2	MCF-7	breast:
6	chr11:16966281..16969842-chr11:16976430..16978510,4	MCF-7	breast:
7	chr11:16976871..16981000-chr11:17000472..17004649,3	MCF-7	breast:
8	chr11:16974672..16978639-chr11:17033931..17036270,6	MCF-7	breast:
9	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55967640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57046173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60844970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60996031	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61708002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947282	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951117	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16964200-16981400	Weak transcription	Gastric	stomach
4	chr11:16965400-16978200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:16968000-16977800	Weak transcription	Pancreas	Pancrea
6	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
7	chr11:16968400-16978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:16968400-16980000	Weak transcription	Liver	Liver
9	chr11:16968800-16977800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:16968800-16978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:16971200-16979400	Enhancers	Stomach Mucosa	stomach
13	chr11:16972400-16978000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:16973000-16977400	Enhancers	Fetal Intestine Small	intestine
15	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
16	chr11:16974800-16980600	Weak transcription	Fetal Lung	lung
17	chr11:16975200-16977400	Enhancers	HepG2	liver
18	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
19	chr11:16975600-16977400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:16975600-16977800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:16976000-16977800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:16976000-16979200	Enhancers	Placenta	Placenta
23	chr11:16976200-16980800	Weak transcription	Fetal Kidney	kidney
24	chr11:16976600-16977600	Enhancers	A549	lung
25	chr11:16976800-16977200	Enhancers	Duodenum Mucosa	Duodenum
26	chr11:16976800-16977800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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