Variant report

Variant	rs60144006
Chromosome Location	chr13:87799458-87799459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs55672132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56062757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195576	1.00[AMR][1000 genomes]
rs58044864	0.80[AFR][1000 genomes]
rs59690989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59949878	0.80[AFR][1000 genomes]
rs73558883	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561054	0.90[AFR][1000 genomes]
rs73561055	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73562444	0.80[AFR][1000 genomes]
rs73562449	0.80[AFR][1000 genomes]
rs73562451	0.80[AFR][1000 genomes]
rs74102211	1.00[AMR][1000 genomes]
rs74103207	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103297	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103381	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103431	1.00[AMR][1000 genomes]
rs74103433	1.00[AMR][1000 genomes]
rs74103690	1.00[AMR][1000 genomes]
rs74103695	1.00[AMR][1000 genomes]
rs74104820	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104839	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104840	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105309	1.00[AMR][1000 genomes]
rs74105624	0.80[AFR][1000 genomes]
rs74105918	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562628	chr13:87766113-87800578	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87799200-87800000	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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