Variant report

Variant	rs60154663
Chromosome Location	chr12:63246647-63246648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:63246491-63246775	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:63240736..63242575-chr12:63246475..63248255,2	K562	blood:
2	chr12:63244647..63247922-chr12:63326690..63328475,3	MCF-7	breast:
3	chr12:63246441..63248804-chr12:63327982..63329807,2	MCF-7	breast:
4	chr12:63241342..63243948-chr12:63244946..63247068,2	MCF-7	breast:

Variant related genes	Relation type
RNU1-83P	TF binding region
ENSG00000111110	Chromatin interaction
ENSG00000252660	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12099667	1.00[EUR][1000 genomes]
rs163681	1.00[EUR][1000 genomes]
rs4105516	1.00[ASN][1000 genomes]
rs59816756	0.86[AFR][1000 genomes]
rs699594	1.00[EUR][1000 genomes]
rs73316270	1.00[ASN][1000 genomes]
rs74097040	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63239400-63260200	Weak transcription	Fetal Intestine Small	intestine
2	chr12:63241000-63247400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:63241000-63247600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:63241000-63252200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:63241000-63252200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:63241000-63252800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:63241200-63250800	Weak transcription	Adipose Nuclei	Adipose
8	chr12:63241200-63254600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr12:63242000-63252200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:63242400-63260200	Weak transcription	Fetal Heart	heart
11	chr12:63242600-63247400	Weak transcription	Brain Substantia Nigra	brain
12	chr12:63242600-63247600	Weak transcription	Brain Anterior Caudate	brain
13	chr12:63242600-63247600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:63242600-63249000	Weak transcription	HepG2	liver
15	chr12:63242800-63247400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:63242800-63247400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:63243000-63253000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:63243400-63247800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:63243600-63247800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:63243600-63252200	Weak transcription	A549	lung
21	chr12:63243800-63252200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:63246200-63248400	Enhancers	Brain Hippocampus Middle	brain
23	chr12:63246400-63247400	Enhancers	Brain Angular Gyrus	brain
24	chr12:63246400-63247400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr12:63246400-63247800	Enhancers	Brain Cingulate Gyrus	brain
26	chr12:63246600-63247600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr12:63246600-63252800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links