Variant report

Variant	rs60155009
Chromosome Location	chr15:76218071-76218072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76211169..76212903-chr15:76216124..76218574,2	K562	blood:

Extended variants
information (count: 175 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs1039547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379955	1.00[EUR][1000 genomes]
rs1394122	1.00[EUR][1000 genomes]
rs1498196	1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	1.00[EUR][1000 genomes]
rs1503955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562403	1.00[EUR][1000 genomes]
rs1695365	1.00[EUR][1000 genomes]
rs16967747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1976328	1.00[EUR][1000 genomes]
rs2133099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133409	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2133410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2441928	1.00[EUR][1000 genomes]
rs2454209	1.00[EUR][1000 genomes]
rs2454212	1.00[EUR][1000 genomes]
rs2454470	1.00[EUR][1000 genomes]
rs2454472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2455897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460801	1.00[EUR][1000 genomes]
rs2469038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2469040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593275	1.00[EUR][1000 genomes]
rs2593281	1.00[EUR][1000 genomes]
rs2593302	1.00[EUR][1000 genomes]
rs2604405	1.00[EUR][1000 genomes]
rs2648437	1.00[EUR][1000 genomes]
rs2655126	1.00[EUR][1000 genomes]
rs2655137	1.00[EUR][1000 genomes]
rs2947239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2959851	1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334941	1.00[EUR][1000 genomes]
rs334951	1.00[EUR][1000 genomes]
rs335673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335675	0.85[EUR][1000 genomes]
rs335676	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335678	1.00[EUR][1000 genomes]
rs335679	1.00[EUR][1000 genomes]
rs335683	1.00[EUR][1000 genomes]
rs335684	1.00[EUR][1000 genomes]
rs335687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335693	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335694	1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	1.00[EUR][1000 genomes]
rs335701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335710	0.85[EUR][1000 genomes]
rs335713	1.00[EUR][1000 genomes]
rs335717	1.00[EUR][1000 genomes]
rs335724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	1.00[EUR][1000 genomes]
rs4886750	0.85[EUR][1000 genomes]
rs55665712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55782145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55828994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139080	1.00[EUR][1000 genomes]
rs56167836	1.00[EUR][1000 genomes]
rs56173902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56218266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57011816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57127155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57141410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57429900	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57971067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57973358	1.00[EUR][1000 genomes]
rs58044283	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170668	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58399164	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58789594	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59143042	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59690620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59819402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59839117	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60191258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60817295	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60846313	1.00[EUR][1000 genomes]
rs61240117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61521312	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62027568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024005	1.00[EUR][1000 genomes]
rs74024006	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024007	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024011	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024015	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024020	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024029	1.00[EUR][1000 genomes]
rs74024030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024038	1.00[EUR][1000 genomes]
rs74024039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024041	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024042	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024043	1.00[EUR][1000 genomes]
rs74024044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024049	1.00[EUR][1000 genomes]
rs74024051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024052	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024053	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028766	1.00[EUR][1000 genomes]
rs8030469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030948	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8031263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036952	1.00[EUR][1000 genomes]
rs8038729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9672219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672952	0.86[AFR][1000 genomes]
rs974718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv984193	chr15:76214943-76221739	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60155009	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
4	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
5	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:76205400-76218600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:76206800-76218800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:76207000-76226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:76207000-76228200	Weak transcription	Brain Substantia Nigra	brain
10	chr15:76207000-76228200	Weak transcription	Colonic Mucosa	Colon
11	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:76207200-76225000	Weak transcription	Spleen	Spleen
13	chr15:76207200-76226600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:76207400-76222200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:76207400-76222200	Weak transcription	Brain Angular Gyrus	brain
16	chr15:76207400-76223000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:76208000-76222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:76209000-76225000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:76209000-76225000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:76209600-76219600	Strong transcription	K562	blood
22	chr15:76209800-76222800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:76210200-76222200	Strong transcription	Primary T cells from cord blood	blood
24	chr15:76210800-76225000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:76212000-76218200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:76212200-76222600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:76212400-76223400	Strong transcription	HepG2	liver
29	chr15:76212800-76218800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:76212800-76219000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:76213000-76221800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:76213000-76222200	Weak transcription	Brain Anterior Caudate	brain
33	chr15:76213000-76224200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:76213400-76219400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:76213600-76219800	Enhancers	Fetal Heart	heart
36	chr15:76214000-76222400	Weak transcription	Placenta	Placenta
37	chr15:76214600-76220200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:76214800-76222800	Weak transcription	Fetal Thymus	thymus
39	chr15:76215000-76220400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:76215000-76226600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:76215200-76222200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:76215200-76222200	Weak transcription	Osteobl	bone
43	chr15:76215200-76222800	Weak transcription	NH-A	brain
44	chr15:76215200-76223200	Weak transcription	Ovary	ovary
45	chr15:76215200-76225000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:76215200-76225000	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:76215200-76225000	Weak transcription	Fetal Lung	lung
48	chr15:76215200-76225000	Weak transcription	NHDF-Ad	bronchial
49	chr15:76215200-76229200	Weak transcription	Esophagus	oesophagus
50	chr15:76215400-76218200	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links