Variant report
| Variant | rs60157619 |
|---|---|
| Chromosome Location | chr8:63521268-63521269 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:63519763..63521581-chr8:63531929..63534148,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs34300611 | 1.00[AMR][1000 genomes] |
| rs55859915 | 1.00[AMR][1000 genomes] |
| rs56095987 | 1.00[AMR][1000 genomes] |
| rs58995924 | 1.00[AMR][1000 genomes] |
| rs60134196 | 1.00[AMR][1000 genomes] |
| rs61162054 | 1.00[AMR][1000 genomes] |
| rs73683198 | 1.00[AMR][1000 genomes] |
| rs73683240 | 1.00[AMR][1000 genomes] |
| rs73683317 | 1.00[AMR][1000 genomes] |
| rs73683324 | 1.00[AMR][1000 genomes] |
| rs73683354 | 1.00[AMR][1000 genomes] |
| rs73683361 | 1.00[AMR][1000 genomes] |
| rs73683426 | 1.00[AMR][1000 genomes] |
| rs73683428 | 1.00[AMR][1000 genomes] |
| rs73683429 | 1.00[AMR][1000 genomes] |
| rs73684987 | 1.00[AMR][1000 genomes] |
| rs73684990 | 1.00[AMR][1000 genomes] |
| rs73684991 | 1.00[AMR][1000 genomes] |
| rs73684992 | 1.00[AMR][1000 genomes] |
| rs73684993 | 1.00[AMR][1000 genomes] |
| rs73684994 | 1.00[AMR][1000 genomes] |
| rs73684995 | 1.00[AMR][1000 genomes] |
| rs73685418 | 1.00[AMR][1000 genomes] |
| rs73685423 | 1.00[AMR][1000 genomes] |
| rs73685424 | 1.00[AMR][1000 genomes] |
| rs73685427 | 1.00[AMR][1000 genomes] |
| rs73685430 | 1.00[AMR][1000 genomes] |
| rs73685431 | 1.00[AMR][1000 genomes] |
| rs73685432 | 1.00[AMR][1000 genomes] |
| rs73685433 | 1.00[AMR][1000 genomes] |
| rs73685434 | 1.00[AMR][1000 genomes] |
| rs73685435 | 1.00[AMR][1000 genomes] |
| rs73685437 | 1.00[AMR][1000 genomes] |
| rs73685442 | 1.00[AMR][1000 genomes] |
| rs73685445 | 1.00[AMR][1000 genomes] |
| rs73685512 | 1.00[AMR][1000 genomes] |
| rs73685515 | 1.00[AMR][1000 genomes] |
| rs73685516 | 1.00[AMR][1000 genomes] |
| rs73685517 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv890960 | chr8:63516962-63629549 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63517000-63521400 | Weak transcription | Fetal Brain Female | brain |
| 2 | chr8:63519600-63521800 | Weak transcription | Fetal Lung | lung |
| 3 | chr8:63520800-63522600 | Enhancers | Cortex derived primary cultured neurospheres | brain |
