Variant report

Variant	rs6016670
Chromosome Location	chr20:40669864-40669865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:40366961..40367845-chr20:40669695..40670564,4	MCF-7	breast:
2	chr20:40584635..40586108-chr20:40669291..40670823,9	MCF-7	breast:
3	chr20:40656350..40657204-chr20:40669571..40670470,3	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1884035	0.86[EUR][1000 genomes]
rs2223912	1.00[EUR][1000 genomes]
rs2866988	0.89[EUR][1000 genomes]
rs3084007	1.00[EUR][1000 genomes]
rs35745973	0.88[EUR][1000 genomes]
rs41278134	0.89[EUR][1000 genomes]
rs41278136	0.93[EUR][1000 genomes]
rs41278142	0.93[EUR][1000 genomes]
rs45500198	0.89[EUR][1000 genomes]
rs58841508	0.93[EUR][1000 genomes]
rs6016681	0.93[EUR][1000 genomes]
rs6016682	0.93[EUR][1000 genomes]
rs6029963	0.89[EUR][1000 genomes]
rs6029964	0.85[EUR][1000 genomes]
rs6029965	0.85[EUR][1000 genomes]
rs6029966	0.93[EUR][1000 genomes]
rs6093551	0.86[EUR][1000 genomes]
rs6102616	0.89[EUR][1000 genomes]
rs6102641	0.98[EUR][1000 genomes]
rs6513754	0.89[EUR][1000 genomes]
rs6513765	0.93[EUR][1000 genomes]
rs73113854	0.91[EUR][1000 genomes]
rs73113856	0.91[EUR][1000 genomes]
rs73113859	0.91[EUR][1000 genomes]
rs73113864	0.91[EUR][1000 genomes]
rs73113865	0.91[EUR][1000 genomes]
rs73113870	0.98[EUR][1000 genomes]
rs73113872	0.96[EUR][1000 genomes]
rs73115457	1.00[EUR][1000 genomes]
rs73115458	1.00[EUR][1000 genomes]
rs73115478	1.00[EUR][1000 genomes]
rs73115479	1.00[EUR][1000 genomes]
rs73115480	1.00[EUR][1000 genomes]
rs73117860	0.96[EUR][1000 genomes]
rs73117872	1.00[EUR][1000 genomes]
rs73117886	0.96[EUR][1000 genomes]
rs73119803	0.93[EUR][1000 genomes]
rs73119807	0.93[EUR][1000 genomes]
rs73119811	0.86[EUR][1000 genomes]
rs73119815	0.93[EUR][1000 genomes]
rs73119820	0.93[EUR][1000 genomes]
rs73119823	0.93[EUR][1000 genomes]
rs73119847	0.93[EUR][1000 genomes]
rs73119850	0.93[EUR][1000 genomes]
rs73122781	0.87[EUR][1000 genomes]
rs73122800	0.89[EUR][1000 genomes]
rs73124713	0.89[EUR][1000 genomes]
rs73124714	0.89[EUR][1000 genomes]
rs73124722	0.89[EUR][1000 genomes]
rs73124730	0.89[EUR][1000 genomes]
rs73129112	0.93[EUR][1000 genomes]
rs73129138	0.93[EUR][1000 genomes]
rs73129147	0.93[EUR][1000 genomes]
rs73129161	0.93[EUR][1000 genomes]
rs73129169	0.93[EUR][1000 genomes]
rs73129170	0.93[EUR][1000 genomes]
rs73129173	0.89[EUR][1000 genomes]
rs73129176	0.93[EUR][1000 genomes]
rs73129180	0.93[EUR][1000 genomes]
rs73129186	0.93[EUR][1000 genomes]
rs73129195	0.89[EUR][1000 genomes]
rs73129199	0.89[EUR][1000 genomes]
rs73131104	0.89[EUR][1000 genomes]
rs73131116	0.89[EUR][1000 genomes]
rs8120362	0.89[EUR][1000 genomes]
rs8124637	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv912873	chr20:40601021-40675704	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40669200-40673800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40669600-40670000	Enhancers	Fetal Brain Male	brain

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